Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.5e-116 422.9 204 100.0
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 9.3e-66 254.2 182 75.3
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.9e-39 166.8 180 55.0
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.8e-38 162.9 181 50.3
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.3e-32 144.1 171 45.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.9e-32 142.5 173 43.9
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 6.7e-32 141.7 174 43.7
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.9e-31 140.2 108 55.6
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.9e-31 140.2 151 48.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.9e-31 140.2 180 41.7
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.3e-31 139.4 170 42.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.3e-31 139.4 170 42.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 3.3e-31 139.4 144 48.6
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 4.3e-31 139.0 108 54.6
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 5.7e-31 138.7 115 51.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.4e-31 138.3 172 39.5
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.6e-30 137.1 121 48.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.2e-30 136.7 117 50.4
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.8e-30 136.3 139 45.3
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.8e-30 136.3 154 40.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.7e-30 136.0 119 51.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.8e-30 135.6 121 47.9
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.3e-30 135.2 151 44.4
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.3e-30 135.2 134 47.0
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 6.3e-30 135.2 180 41.1
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 6.3e-30 135.2 121 49.6
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 6.3e-30 135.2 151 44.4
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 8.2e-30 134.8 140 43.6
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.1e-29 134.4 166 41.6
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.1e-29 134.4 153 44.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.4e-29 134.0 182 37.9
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.4e-29 134.0 126 50.8
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-29 134.0 121 47.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.4e-29 134.0 180 39.4
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.8e-29 133.7 89 60.7
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.8e-29 133.7 97 58.8
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.4e-29 133.3 115 52.2
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.4e-29 133.3 102 54.9
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.4e-29 133.3 165 40.6
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 3.1e-29 132.9 162 41.4
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.1e-29 132.9 175 41.1
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.1e-29 132.9 94 55.3
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 4.1e-29 132.5 88 61.4
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.1e-29 132.5 154 46.8
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.1e-29 132.5 154 46.8
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 4.1e-29 132.5 98 55.1
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 4.1e-29 132.5 96 54.2
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.1e-29 132.5 153 45.1
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 5.3e-29 132.1 126 46.8
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.9e-29 131.7 170 42.9
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 6.9e-29 131.7 148 41.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 9.0e-29 131.3 117 53.0
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.2e-28 131.0 147 44.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.2e-28 131.0 94 58.5
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-28 131.0 150 45.3
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.2e-28 131.0 183 42.6
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.2e-28 131.0 123 49.6
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.2e-28 131.0 170 40.0
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-28 130.6 102 52.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.5e-28 130.6 150 44.0
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.5e-28 130.6 126 46.8
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.0e-28 130.2 148 45.3
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.0e-28 130.2 157 43.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 2.0e-28 130.2 149 43.6
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.4e-28 129.4 124 49.2
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 3.4e-28 129.4 144 43.1
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.4e-28 129.4 157 42.7
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 3.4e-28 129.4 149 45.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 4.5e-28 129.0 113 52.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.5e-28 129.0 88 60.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.5e-28 129.0 145 44.1
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 4.5e-28 129.0 195 37.9
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.7e-28 128.3 150 45.3
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.0e-27 127.9 84 61.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.0e-27 127.9 123 47.2
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.0e-27 127.9 155 40.6
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.3e-27 127.5 96 53.1
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.7e-27 127.1 126 50.8
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.2e-27 126.7 81 64.2
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.2e-27 126.7 128 46.9
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.2e-27 126.7 128 46.9
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.8e-27 125.9 118 46.6
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.8e-27 125.9 122 49.2
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 3.8e-27 125.9 132 45.5
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.8e-27 125.9 119 47.1
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 5.0e-27 125.6 96 51.0
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 5.0e-27 125.6 171 39.2
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 5.0e-27 125.6 136 44.9
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 6.5e-27 125.2 171 39.8
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 6.5e-27 125.2 172 39.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 8.5e-27 124.8 79 59.5
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 8.5e-27 124.8 165 39.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.1e-26 124.4 119 49.6
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.1e-26 124.4 90 52.2
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.9e-26 123.6 173 38.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.9e-26 123.6 135 41.5
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.9e-26 123.6 135 41.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-26 123.6 128 46.1
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.9e-26 123.6 90 54.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.9e-26 123.6 160 41.9
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.5e-26 123.2 173 38.2
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.5e-26 123.2 143 44.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.2e-26 122.9 139 42.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.2e-26 122.9 113 46.9
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.2e-26 122.9 124 41.1
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 4.2e-26 122.5 137 43.1
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 4.2e-26 122.5 137 43.1
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.2e-26 121.7 122 45.1
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 9.4e-26 121.3 94 52.1
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.2e-25 120.9 168 38.1
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.2e-25 120.9 188 36.2
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.6e-25 120.6 139 40.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.6e-25 120.6 145 42.8
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.6e-25 120.6 102 50.0
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.1e-25 120.2 120 49.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.0e-24 117.9 94 55.3
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.0e-24 117.9 108 49.1
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 5.1e-24 115.5 146 40.4
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.5e-23 114.0 133 45.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.5e-23 114.0 88 53.4
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.7e-23 112.1 84 53.6
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.3e-22 110.9 133 41.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.7e-22 110.5 110 44.5
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.2e-22 110.2 115 43.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.8e-22 109.8 117 43.6
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 4.8e-22 109.0 115 43.5
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 3.1e-21 106.3 89 48.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 4.1e-21 105.9 84 52.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 4.1e-21 105.9 84 47.6
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.0e-20 103.6 127 39.4
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 7.7e-20 101.7 92 46.7
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.3e-19 100.9 134 39.6
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.7e-19 100.5 71 53.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.9e-19 99.8 102 44.1
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 8.5e-19 98.2 122 41.0
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.5e-18 96.7 91 45.1
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 3.2e-18 96.3 123 40.7
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 5.5e-18 95.5 62 61.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 5.5e-18 95.5 86 43.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.4e-16 90.9 123 37.4
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.8e-16 90.5 127 38.6
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.8e-16 90.5 119 39.5
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 8.8e-16 88.2 88 42.0
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 5.3e-13 79.0 86 40.7
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.9e-11 73.2 115 37.4
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 8.5e-11 71.6 75 49.3
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.1e-10 71.2 66 48.5
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.2e-10 69.7 121 37.2
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.2e-10 69.3 121 37.2
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 8.8e-08 61.6 85 36.5
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 2.8e-06 56.6 65 41.5


User provided reference genes

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