Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1625.9 858 100.0
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1476.5 858 92.0
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1323.1 855 82.2
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1220.7 858 75.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1214.9 858 74.7
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1211.4 858 74.6
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1204.1 858 74.4
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1201.0 857 73.9
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1198.7 859 74.4
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1187.9 857 72.8
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1186.4 858 73.8
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1185.6 858 73.5
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1184.5 857 72.6
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1180.2 857 72.7
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1175.6 857 73.0
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1174.5 857 73.0
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1174.5 857 72.9
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1170.6 864 71.9
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1170.2 859 73.1
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 0.0e+00 1168.7 858 73.2
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 0.0e+00 1164.8 824 75.0
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1162.1 853 73.2
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1157.9 858 71.7
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1152.9 823 75.2
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1152.5 860 70.8
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1147.1 858 71.3
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 0.0e+00 1144.0 858 71.7
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 0.0e+00 1140.2 859 72.1
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1140.2 860 71.4
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1139.4 858 70.0
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1139.0 861 70.4
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1137.9 858 71.0
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1135.9 859 71.6
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 0.0e+00 1130.5 858 70.6
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 0.0e+00 1129.0 856 70.2
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1114.0 857 69.5
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1113.6 859 70.1
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1112.1 857 69.7
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1107.0 857 68.8
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 0.0e+00 1102.8 854 68.3
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1102.4 857 68.6
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1100.1 856 68.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1100.1 856 68.2
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 0.0e+00 1099.3 854 68.3
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1099.3 857 69.3
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 0.0e+00 1095.9 854 68.3
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 0.0e+00 1093.2 856 68.6
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1092.8 881 67.8
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 0.0e+00 1090.9 861 68.2
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 0.0e+00 1086.6 932 65.1
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 0.0e+00 1082.0 856 67.9
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 0.0e+00 1080.1 861 68.1
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 859 66.4
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.2e-311 1073.2 879 66.3
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 5.8e-310 1067.4 793 72.5
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 9.9e-310 1066.6 851 67.3
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.3e-309 1066.2 855 66.0
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 6.4e-309 1063.9 856 66.2
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 1.2e-307 1059.7 860 66.5
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 2.1e-307 1058.9 856 66.5
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 3.5e-307 1058.1 856 65.9
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.7e-306 1055.8 795 70.7
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 6.6e-306 1053.9 866 65.8
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 5.6e-305 1050.8 896 64.6
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.6e-305 1050.8 793 70.6
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 3.6e-304 1048.1 870 65.7
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.4e-303 1046.2 856 65.5
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 5.3e-303 1044.3 856 65.4
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.4e-302 1041.6 856 65.4
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 9.9e-302 1040.0 856 65.2
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 1.3e-301 1039.6 856 65.3
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 9.3e-300 1033.5 857 65.1
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.2e-299 1033.1 882 64.5
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 2.7e-299 1031.9 852 65.4
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 3.5e-299 1031.6 856 65.0
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.3e-298 1029.6 856 65.0
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 6.6e-298 1027.3 856 64.8
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.7e-293 1012.7 852 65.4
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 6.4e-293 1010.7 872 63.5
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.9e-289 999.2 899 61.7
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.9e-289 999.2 957 58.2
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 7.4e-289 997.3 867 62.6
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 4.8e-288 994.6 857 63.4
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 4.0e-287 991.5 851 63.0
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 3.4e-286 988.4 856 63.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 3.2e-284 981.9 856 62.7
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 2.7e-283 978.8 856 62.7
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 4.5e-262 908.3 856 59.8
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 2.9e-261 905.6 860 57.4
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 8.2e-256 887.5 861 56.0
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 8.5e-253 877.5 858 59.7
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.6e-251 873.2 710 66.6
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.5e-244 850.1 704 66.8
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.9e-236 823.2 856 54.7
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 4.4e-233 812.0 904 51.2
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.7e-225 785.0 631 67.7
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-204 717.6 661 61.4
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.0e-173 614.8 876 43.7
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 9.7e-164 581.6 801 42.8
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 3.4e-161 573.2 831 41.8
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.7e-160 570.9 581 57.0
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 3.2e-151 540.0 440 67.3
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 3.9e-149 533.1 895 38.2
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.5e-145 521.2 377 70.0
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 7.7e-145 518.8 528 56.8
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.7e-142 510.4 814 38.1
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.9e-141 506.5 324 78.4
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 7.0e-138 495.7 866 37.6
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.1e-114 416.8 269 77.7
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 4.3e-111 406.8 483 52.4
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 7.0e-106 389.4 253 75.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.4e-98 364.4 275 65.8
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 4.0e-93 347.1 347 56.8
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.3e-80 305.4 261 67.4
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.5e-57 227.6 390 39.5
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 3.3e-55 221.1 844 25.7
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-52 212.2 255 48.6
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.3e-47 194.5 163 62.0
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.7e-41 174.9 870 22.9
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.1e-39 169.5 119 74.8
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 2.5e-39 168.3 119 72.3
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.0e-35 156.4 93 81.7
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.2e-34 151.4 264 39.8
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.0e-31 142.1 103 71.8
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 2.6e-28 131.7 208 41.8
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 8.0e-25 120.2 91 65.9
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 8.0e-25 120.2 91 65.9
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.3e-24 118.6 69 91.3
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 5.2e-24 117.5 69 79.7
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.2e-22 112.1 139 46.0
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 6.3e-22 110.5 104 59.6
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 2.7e-17 95.1 208 37.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.4e-15 87.8 79 60.8
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.7e-11 75.9 65 61.5
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 2.9e-11 75.1 86 51.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.6e-09 68.2 47 72.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 2.8e-06 58.5 260 25.8


User provided reference genes

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