Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 2.6e-131 472.2 275 100.0
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 3.9e-90 335.5 300 70.0
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 4.0e-87 325.5 269 76.2
Cfa005244 Carpinus fangiana HOM05D023024 ORTHO05D008438 1.3e-37 161.0 208 56.7
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 3.7e-32 142.9 290 42.4
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 1.8e-18 97.4 182 46.2
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 2.2e-16 90.5 282 33.3
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 2.0e-14 84.0 138 43.5
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 1.3e-13 81.3 138 42.0
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 3.8e-13 79.7 151 41.7
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 2.5e-12 77.0 185 37.3
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.6e-11 74.3 185 36.8
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 2.1e-11 73.9 121 43.8
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 2.7e-11 73.6 269 32.0
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 2.7e-11 73.6 255 31.4
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 3.6e-11 73.2 251 33.1
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 8.0e-11 72.0 65 61.5
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 6.7e-10 68.9 162 35.8
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 2.0e-09 67.4 128 39.8
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 3.3e-09 66.6 65 58.5
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 4.4e-09 66.2 151 39.7
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 5.7e-09 65.9 263 33.8
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 7.5e-09 65.5 95 44.2
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 7.5e-09 65.5 237 32.1
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 9.7e-09 65.1 221 29.9
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 9.7e-09 65.1 143 35.7
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 1.3e-08 64.7 203 31.0
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 1.7e-08 64.3 92 44.6
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 2.2e-08 63.9 183 35.0
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 3.7e-08 63.2 213 32.4
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 4.8e-08 62.8 160 37.5
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 6.3e-08 62.4 241 29.5
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 8.2e-08 62.0 184 33.7
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 1.4e-07 61.2 91 41.8
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.4e-07 61.2 190 31.6
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 3.1e-07 60.1 79 49.4
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 5.3e-07 59.3 59 57.6
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 5.3e-07 59.3 205 36.6
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.2e-06 58.2 97 43.3
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.6e-06 57.8 64 48.4
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 1.6e-06 57.8 86 39.5
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 1.6e-06 57.8 156 36.5
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 1.6e-06 57.8 57 57.9
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 2.0e-06 57.4 64 50.0
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 2.0e-06 57.4 93 41.9
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 2.7e-06 57.0 77 46.8
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 2.7e-06 57.0 77 46.8
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 2.7e-06 57.0 77 46.8
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 2.7e-06 57.0 66 53.0
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 3.5e-06 56.6 255 29.4
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 3.5e-06 56.6 133 40.6
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 3.5e-06 56.6 133 40.6
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 3.5e-06 56.6 188 33.5
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 5.9e-06 55.8 76 48.7
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 5.9e-06 55.8 74 44.6
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 5.9e-06 55.8 263 31.6
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 7.7e-06 55.5 89 42.7
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 7.7e-06 55.5 198 35.9
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 7.7e-06 55.5 134 38.1
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 7.7e-06 55.5 166 30.1


User provided reference genes

Program Settings