Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23914 Corylus avellana HOM05D013890 ORTHO05D016266 1.2e-157 559.7 261 100.0
QL02p097446 Quercus lobata HOM05D013890 ORTHO05D016266 1.2e-40 171.0 123 63.4
Potri.006G170200 Populus trichocarpa HOM05D013890 ORTHO05D016266 1.1e-30 137.9 124 48.4
Sabra06G0131100 Salix brachista HOM05D013890 ORTHO05D016266 2.3e-28 130.2 119 48.7
TAR465G0001 Trochodendron aralioides HOM05D013890 ORTHO05D016266 5.8e-27 125.6 119 51.3
Gohir.A08G090700 Gossypium hirsutum HOM05D013890 ORTHO05D016266 7.5e-27 125.2 119 51.3
Gohir.D08G095100 Gossypium hirsutum HOM05D013890 ORTHO05D016266 7.5e-27 125.2 119 51.3
Manes.14G151900 Manihot esculenta HOM05D013890 ORTHO05D016266 4.9e-26 122.5 117 45.3
Thecc.09G169700 Theobroma cacao HOM05D013890 ORTHO05D016266 9.2e-25 118.2 119 46.2
Nn7g36264 Nelumbo nucifera HOM05D013890 ORTHO05D016266 2.1e-21 107.1 138 44.9
FAN24G1258 Fragaria x ananassa HOM05D009280 ORTHO05D012103 9.2e-17 91.7 217 29.5
Nn2g15260 Nelumbo nucifera HOM05D013890 ORTHO05D016266 1.2e-13 81.3 119 33.6
ClCG08G002620 Citrullus lanatus HOM05D012637 ORTHO05D015615 2.3e-12 77.0 226 31.0
Nn1g08743 Nelumbo nucifera HOM05D000256 ORTHO05D000119 4.0e-12 76.3 119 35.3
Nn1g08741 Nelumbo nucifera HOM05D000256 ORTHO05D000119 2.6e-11 73.6 116 34.5
Nn1g08742 Nelumbo nucifera HOM05D000256 ORTHO05D000119 2.6e-11 73.6 116 34.5
Nn1g08718 Nelumbo nucifera HOM05D000256 ORTHO05D000119 7.6e-11 72.0 118 33.9
CsaV3_7G025520 Cucumis sativus L. HOM05D000256 ORTHO05D000119 9.9e-11 71.6 258 27.1
Gorai.007G244400 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.3e-10 71.2 111 37.8
Migut.N02440 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.7e-10 70.9 107 31.8
Nn1g03100 Nelumbo nucifera HOM05D000256 ORTHO05D000119 1.7e-10 70.9 114 36.8
QL01p019403 Quercus lobata HOM05D000256 ORTHO05D000119 1.7e-10 70.9 109 34.9
Nn1g08719 Nelumbo nucifera HOM05D000256 ORTHO05D000119 2.2e-10 70.5 116 32.8
Peaxi162Scf00047g01539 Petunia axillaris HOM05D000256 ORTHO05D000119 2.9e-10 70.1 270 26.7
Gohir.A11G198542 Gossypium hirsutum HOM05D000256 ORTHO05D000119 3.8e-10 69.7 111 36.9
PSO541G1555 Papaver somniferum HOM05D000256 ORTHO05D000119 4.9e-10 69.3 116 32.8
Nn1g08705 Nelumbo nucifera HOM05D000256 ORTHO05D000119 6.4e-10 68.9 115 33.0
Aa31LG2G15360 Aethionema arabicum HOM05D000256 ORTHO05D000119 1.4e-09 67.8 253 24.9
CSS0050460 Camellia sinensis var. sinensis HOM05D000256 ORTHO05D000119 1.4e-09 67.8 110 34.5
PSO210G4725 Papaver somniferum HOM05D000256 ORTHO05D000119 1.4e-09 67.8 112 33.0
Sed0000193 Sechium edule HOM05D000256 ORTHO05D000119 1.9e-09 67.4 240 26.7
ATR0693G139 Amborella trichopoda HOM05D000256 ORTHO05D000119 2.4e-09 67.0 111 31.5
Lalb_Chr15g0076351 Lupinus albus HOM05D000256 ORTHO05D000119 4.1e-09 66.2 122 35.2
Nn1g08794 Nelumbo nucifera HOM05D000256 ORTHO05D000119 4.1e-09 66.2 114 35.1
CAN.G742.38 Capsicum annuum HOM05D000256 ORTHO05D000119 5.4e-09 65.9 109 31.2
AT4G16195 Arabidopsis thaliana HOM05D000256 ORTHO05D000119 9.2e-09 65.1 114 35.1
Potri.010G008300 Populus trichocarpa HOM05D000256 ORTHO05D000119 1.2e-08 64.7 111 31.5
Aqoxy3G02792 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 1.6e-08 64.3 112 33.9
MSTRG.12394 Avicennia marina HOM05D000256 ORTHO05D000119 1.6e-08 64.3 109 32.1
Ciclev10023991m.g Citrus clementina HOM05D000256 ORTHO05D000119 1.6e-08 64.3 111 34.2
Lj4g0012468 Lotus japonicus HOM05D000256 ORTHO05D000119 1.6e-08 64.3 112 31.2
SGA_v2.0_scaffold329G48834 Striga asiatica HOM05D000256 ORTHO05D000119 1.6e-08 64.3 211 27.5
Atru.chr4.3198 Acer truncatum HOM05D000256 ORTHO05D000119 2.1e-08 63.9 116 31.0
Medtr8g094890 Medicago truncatula HOM05D000256 ORTHO05D000119 2.1e-08 63.9 109 33.0
Medtr8g094915 Medicago truncatula HOM05D000256 ORTHO05D000119 2.1e-08 63.9 109 33.0
Ciclev10024107m.g Citrus clementina HOM05D000256 ORTHO05D000119 3.5e-08 63.2 111 36.9
Manes.01G048300 Manihot esculenta HOM05D000256 ORTHO05D000119 3.5e-08 63.2 111 31.5
PGR083G1396 Punica granatum HOM05D000256 ORTHO05D000119 3.5e-08 63.2 131 30.5
Sed0022747 Sechium edule HOM05D000256 ORTHO05D000119 3.5e-08 63.2 252 23.4
COL.COLO4_36728 Corchorus olitorius HOM05D000256 ORTHO05D000119 4.6e-08 62.8 112 28.6
Nitab4.5_0002182g0010 Nicotiana tabacum HOM05D000256 ORTHO05D000119 4.6e-08 62.8 241 24.5
Phvul.008G064500 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 4.6e-08 62.8 104 37.5
SGA_v2.0_scaffold114G31929 Striga asiatica HOM05D000256 ORTHO05D000119 4.6e-08 62.8 303 24.1
Aa31LG11G5250 Aethionema arabicum HOM05D013273 ORTHO05D002833 6.0e-08 62.4 162 29.0
CsaV3_5G013340 Cucumis sativus L. HOM05D000256 ORTHO05D000119 6.0e-08 62.4 214 26.6
Lalb_Chr07g0181531 Lupinus albus HOM05D000256 ORTHO05D000119 6.0e-08 62.4 112 29.5
Carub.0003s1672 Capsella rubella HOM05D000256 ORTHO05D000119 7.8e-08 62.0 112 33.0
Ciclev10007065m.g Citrus clementina HOM05D000256 ORTHO05D000119 7.8e-08 62.0 109 32.1
Nitab4.5_0000401g0130 Nicotiana tabacum HOM05D000256 ORTHO05D000119 7.8e-08 62.0 238 26.9
TAR636G2210 Trochodendron aralioides HOM05D000256 ORTHO05D000119 7.8e-08 62.0 112 33.9
PSO407G0146 Papaver somniferum HOM05D000256 ORTHO05D000119 1.0e-07 61.6 115 33.9
CiPaw.13G128600 Carya illinoinensis HOM05D000256 ORTHO05D000119 1.7e-07 60.8 108 31.5
Solyc11g071900.1 Solanum lycopersicum HOM05D000256 ORTHO05D000119 1.7e-07 60.8 108 31.5
TAR636G1455 Trochodendron aralioides HOM05D000256 ORTHO05D000119 1.7e-07 60.8 114 34.2
Aqoxy3G03221 Aquilegia oxysepala HOM05D053432 ORTHO05D000119 2.3e-07 60.5 120 30.8
Gohir.A08G193464 Gossypium hirsutum HOM05D000256 ORTHO05D000119 2.3e-07 60.5 109 30.3
Phvul.003G125200 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 2.3e-07 60.5 112 30.4
Nn6g34635 Nelumbo nucifera HOM05D000256 ORTHO05D000119 3.0e-07 60.1 107 29.0
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 3.9e-07 59.7 110 34.5
Phvul.010G083500 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 3.9e-07 59.7 114 31.6
Thecc.02G043800 Theobroma cacao HOM05D000256 ORTHO05D000119 3.9e-07 59.7 112 28.6
Ciclev10022738m.g Citrus clementina HOM05D000256 ORTHO05D000119 5.1e-07 59.3 113 31.9
Lj2g0009295 Lotus japonicus HOM05D000256 ORTHO05D000119 5.1e-07 59.3 112 27.7
PSO017G0413 Papaver somniferum HOM05D000256 ORTHO05D000119 6.6e-07 58.9 123 30.1
Sc25g0004920 Simmondsia chinensis HOM05D000256 ORTHO05D000119 6.6e-07 58.9 109 32.1
SGA_v2.0_scaffold2G01373 Striga asiatica HOM05D000256 ORTHO05D000119 6.6e-07 58.9 226 26.5
AT3G16970 Arabidopsis thaliana HOM05D000256 ORTHO05D000119 8.6e-07 58.5 116 31.0
CAN.G742.37 Capsicum annuum HOM05D000256 ORTHO05D000119 8.6e-07 58.5 105 31.4
FAN19G2757 Fragaria x ananassa HOM05D000256 ORTHO05D000119 8.6e-07 58.5 112 33.9
Lalb_Chr18g0044391 Lupinus albus HOM05D000256 ORTHO05D000119 8.6e-07 58.5 106 31.1
PSO170G0242 Papaver somniferum HOM05D000256 ORTHO05D000119 8.6e-07 58.5 114 34.2
PSO170G1809 Papaver somniferum HOM05D000256 ORTHO05D000119 8.6e-07 58.5 109 28.4
Phvul.011G179400 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 8.6e-07 58.5 103 35.0
Aqoxy5G00764 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 1.1e-06 58.2 106 29.2
FAN15G1242 Fragaria x ananassa HOM05D000070 ORTHO05D003190 1.1e-06 58.2 98 32.7
Oeu061052.1 Olea europaea HOM05D000256 ORTHO05D000119 1.1e-06 58.2 93 38.7
Phvul.008G063600 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.1e-06 58.2 99 35.4
SalBow7G0504 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.1e-06 58.2 105 29.5
Actinidia25723 Actinidia chinensis HOM05D000256 ORTHO05D000119 1.5e-06 57.8 112 27.7
AL3G29950 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 1.5e-06 57.8 119 34.5
COL.COLO4_17920 Corchorus olitorius HOM05D000256 ORTHO05D000119 1.5e-06 57.8 114 26.3
Phvul.008G063400 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.5e-06 57.8 113 36.3
SalBow4G2587 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.5e-06 57.8 100 37.0
SalBow7G1990 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.5e-06 57.8 105 29.5
MELO3C032449.2 Cucumis melo HOM05D012637 ORTHO05D000119 1.9e-06 57.4 97 37.1
Migut.F00958 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.9e-06 57.4 105 34.3
PSO170G2087 Papaver somniferum HOM05D000256 ORTHO05D000119 1.9e-06 57.4 109 30.3
AL7G38890 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 2.5e-06 57.0 109 30.3
BcaC06g32996 Brassica carinata HOM05D000256 ORTHO05D000119 2.5e-06 57.0 109 31.2
BraA03t09878Z Brassica rapa HOM05D000256 ORTHO05D000119 2.5e-06 57.0 112 33.9
COL.COLO4_11200 Corchorus olitorius HOM05D000256 ORTHO05D000119 2.5e-06 57.0 96 36.5
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.5e-06 57.0 111 29.7
Gohir.A08G193448 Gossypium hirsutum HOM05D000256 ORTHO05D000119 2.5e-06 57.0 109 29.4
Hma1.2p1_0691F.1_g204070 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.5e-06 57.0 111 28.8
Phvul.008G063700 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 2.5e-06 57.0 92 39.1
Phvul.008G123100 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 2.5e-06 57.0 93 36.6
PGR042G2813 Punica granatum HOM05D000256 ORTHO05D000119 2.5e-06 57.0 123 33.3
TAR623G1688 Trochodendron aralioides HOM05D000256 ORTHO05D000119 2.5e-06 57.0 105 32.4
BcaC09g48649 Brassica carinata HOM05D000256 ORTHO05D000119 3.3e-06 56.6 123 30.1
C01p47280 Brassica napus HOM05D000256 ORTHO05D000119 3.3e-06 56.6 123 30.1
BolC1t04698H Brassica oleracea HOM05D000256 ORTHO05D000119 3.3e-06 56.6 123 30.1
Carub.0007s2534 Capsella rubella HOM05D000256 ORTHO05D000119 3.3e-06 56.6 111 32.4
PSO017G6864 Papaver somniferum HOM05D000256 ORTHO05D000119 3.3e-06 56.6 114 29.8
THA.LOC104820113 Tarenaya hassleriana HOM05D000256 ORTHO05D000119 3.3e-06 56.6 92 33.7
TPR.G8259 Trifolium pratense HOM05D000256 ORTHO05D000119 3.3e-06 56.6 110 31.8
VMungo0331G1740 Vigna mungo HOM05D000256 ORTHO05D000119 3.3e-06 56.6 112 31.2
A02p05710 Brassica napus HOM05D000256 ORTHO05D000119 4.3e-06 56.2 91 35.2
BNapus_Darmor_BZH_scaffold_38p02240 Brassica napus HOM05D000256 ORTHO05D000119 4.3e-06 56.2 91 36.3
BraA02t05523Z Brassica rapa HOM05D000256 ORTHO05D000119 4.3e-06 56.2 91 35.2
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 4.3e-06 56.2 117 32.5
Eucgr.B02182 Eucalyptus grandis HOM05D000256 ORTHO05D000119 4.3e-06 56.2 112 26.8
Lalb_Chr15g0076181 Lupinus albus HOM05D000256 ORTHO05D000119 4.3e-06 56.2 109 32.1
MD05G1182000 Malus domestica HOM05D000256 ORTHO05D000119 4.3e-06 56.2 115 33.0
Manes.09G050200 Manihot esculenta HOM05D000256 ORTHO05D000119 4.3e-06 56.2 113 31.0
PSO339G5481 Papaver somniferum HOM05D000256 ORTHO05D000119 4.3e-06 56.2 112 29.5
PSO339G5905 Papaver somniferum HOM05D000256 ORTHO05D000119 4.3e-06 56.2 112 29.5
Phvul.008G064600 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 4.3e-06 56.2 98 37.8
Sc05g0002250 Simmondsia chinensis HOM05D000256 ORTHO05D000119 4.3e-06 56.2 112 32.1
Ciclev10024159m.g Citrus clementina HOM05D000256 ORTHO05D000119 5.6e-06 55.8 98 33.7
Duzib052G0546 Durio zibethinus HOM05D000256 ORTHO05D000119 5.6e-06 55.8 110 28.2
Eucgr.L01080 Eucalyptus grandis HOM05D000256 ORTHO05D000119 5.6e-06 55.8 111 27.0
Gohir.D08G211350 Gossypium hirsutum HOM05D000256 ORTHO05D000119 5.6e-06 55.8 113 31.0
Lalb_Chr11g0072401 Lupinus albus HOM05D000256 ORTHO05D000119 5.6e-06 55.8 92 37.0
Prupe.4G273700 Prunus persica HOM05D015853 ORTHO05D000119 5.6e-06 55.8 108 38.0
Sc25g0004910 Simmondsia chinensis HOM05D000256 ORTHO05D000119 5.6e-06 55.8 109 33.0
Thecc.01G232000 Theobroma cacao HOM05D000256 ORTHO05D000119 5.6e-06 55.8 110 30.9
Aa31LG3G3250 Aethionema arabicum HOM05D003012 ORTHO05D002833 7.3e-06 55.5 202 30.2
Aqoxy3G01490 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 7.3e-06 55.5 125 30.4
BolC2t06216H Brassica oleracea HOM05D000256 ORTHO05D000119 7.3e-06 55.5 99 31.3
BraA02t04863Z Brassica rapa HOM05D000256 ORTHO05D000119 7.3e-06 55.5 99 31.3
Ciclev10006763m.g Citrus clementina HOM05D000256 ORTHO05D000119 7.3e-06 55.5 114 34.2
FvH4_2g19700 Fragaria vesca HOM05D000256 ORTHO05D000119 7.3e-06 55.5 95 34.7
FvH4_2g19740 Fragaria vesca HOM05D000256 ORTHO05D000119 7.3e-06 55.5 116 32.8
Gorai.004G058000 Gossypium raimondii HOM05D000256 ORTHO05D000119 7.3e-06 55.5 120 28.3
Lalb_Chr11g0072391 Lupinus albus HOM05D000256 ORTHO05D000119 7.3e-06 55.5 117 29.9
PSO104G0050 Papaver somniferum HOM05D000256 ORTHO05D000119 7.3e-06 55.5 108 33.3
C02p02520 Brassica napus HOM05D000256 ORTHO05D000119 9.6e-06 55.1 99 30.3
FvH4_2g19690 Fragaria vesca HOM05D000256 ORTHO05D000119 9.6e-06 55.1 115 29.6
PGR044G2343 Punica granatum HOM05D000256 ORTHO05D000119 9.6e-06 55.1 106 34.0
SalBow1G3274 Salvia bowleyana HOM05D000256 ORTHO05D000119 9.6e-06 55.1 58 44.8
Sc22g0002900 Simmondsia chinensis HOM05D000256 ORTHO05D000119 9.6e-06 55.1 104 28.8
Sopen11g029570 Solanum pennellii HOM05D000256 ORTHO05D000119 9.6e-06 55.1 93 30.1
VMungo0420G0002 Vigna mungo HOM05D000256 ORTHO05D000119 9.6e-06 55.1 113 29.2


User provided reference genes

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