Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 1.4e-47 192.6 98 100.0
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 4.2e-39 164.5 100 88.0
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 2.2e-27 125.6 101 70.3
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 1.1e-23 113.2 104 63.5
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 3.2e-23 111.7 101 62.4
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 9.4e-23 110.2 101 63.4
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 8.8e-21 103.6 100 58.0
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 2.6e-20 102.1 100 61.0
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 4.4e-20 101.3 100 61.0
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 5.7e-20 100.9 101 57.4
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 7.4e-20 100.5 101 61.4
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.3e-19 99.8 101 57.4
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 4.8e-19 97.8 101 56.4
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 6.3e-19 97.4 101 56.4
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 6.3e-19 97.4 100 58.0
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 1.4e-18 96.3 98 58.2
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 7.0e-18 94.0 100 55.0
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 1.6e-17 92.8 100 54.0
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 1.3e-16 89.7 100 58.0
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 2.5e-15 85.5 98 49.0
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 2.1e-14 82.4 88 52.3
Prupe.6G096000 Prunus persica HOM05D007887 ORTHO05D009725 8.0e-14 80.5 78 57.7
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 3.0e-13 78.6 104 49.0
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 1.5e-12 76.3 99 47.5
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 2.6e-12 75.5 99 48.5
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 7.5e-12 73.9 100 46.0
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 9.8e-12 73.6 116 44.0
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 1.3e-11 73.2 97 46.4
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 2.8e-11 72.0 98 42.9
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 6.3e-11 70.9 101 46.5
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 6.3e-11 70.9 101 46.5
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 1.4e-10 69.7 101 45.5
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 3.1e-10 68.6 101 45.5
Psat7g222640 Pisum sativum HOM05D007887 ORTHO05D009725 3.1e-10 68.6 104 42.3
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 3.1e-10 68.6 102 49.0
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 4.1e-10 68.2 99 43.4
Sc06g0010490 Simmondsia chinensis HOM05D007887 ORTHO05D009725 9.1e-10 67.0 86 50.0
Lj3g0011826 Lotus japonicus HOM05D007887 ORTHO05D009725 1.6e-09 66.2 106 49.1
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 2.0e-09 65.9 102 45.1
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 7.7e-09 63.9 96 44.8
Eucgr.J00947 Eucalyptus grandis HOM05D007887 ORTHO05D009725 7.7e-09 63.9 104 43.3
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 1.3e-08 63.2 97 42.3
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 1.7e-08 62.8 98 43.9
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 2.2e-08 62.4 103 43.7
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 3.8e-08 61.6 97 41.2
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 3.8e-08 61.6 104 41.3
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 3.8e-08 61.6 95 43.2
Ca_01431_v3 Cicer arietinum L. HOM05D007887 ORTHO05D009725 6.5e-08 60.8 93 46.2
Sp6g21990 Schrenkiella parvula HOM05D007887 ORTHO05D009725 6.5e-08 60.8 103 39.8
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 8.5e-08 60.5 95 40.0
Gohir.A13G220700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 8.5e-08 60.5 98 37.8
Phvul.011G072900 Phaseolus vulgaris HOM05D007887 ORTHO05D009725 1.1e-07 60.1 103 44.7
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 1.9e-07 59.3 96 42.7
Ciclev10029602m.g Citrus clementina HOM05D007887 ORTHO05D009725 3.2e-07 58.5 43 67.4
DCAR_017079 Daucus carota HOM05D007887 ORTHO05D009725 3.2e-07 58.5 44 61.4
Aa31LG1G12450 Aethionema arabicum HOM05D007887 ORTHO05D009725 4.2e-07 58.2 96 40.6
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 4.2e-07 58.2 102 40.2
COL.COLO4_05193 Corchorus olitorius HOM05D007887 ORTHO05D009725 4.2e-07 58.2 73 54.8
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 5.5e-07 57.8 99 41.4
Glyma.13G328200 Glycine max HOM05D007887 ORTHO05D009725 7.2e-07 57.4 101 40.6
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 9.4e-07 57.0 102 39.2
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 9.4e-07 57.0 102 39.2
Lj3g0000190 Lotus japonicus HOM05D007887 ORTHO05D009725 9.4e-07 57.0 108 42.6
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 1.2e-06 56.6 102 38.2
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 1.2e-06 56.6 102 38.2
CDE09G0302 Ceratophyllum demersum HOM05D041108 ORTHO05D009725 1.2e-06 56.6 45 62.2
arahy.Tifrunner.gnm1.ann1.QG78WL Arachis hypogaea HOM05D007887 ORTHO05D009725 1.6e-06 56.2 61 49.2
arahy.Tifrunner.gnm1.ann1.5EA918 Arachis hypogaea HOM05D007887 ORTHO05D009725 2.1e-06 55.8 61 49.2
arahy.Tifrunner.gnm1.ann1.VU6S4B Arachis hypogaea HOM05D007887 ORTHO05D009725 2.1e-06 55.8 61 50.8
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 2.1e-06 55.8 103 37.9
arahy.Tifrunner.gnm1.ann1.ZKT7Q5 Arachis hypogaea HOM05D007887 ORTHO05D009725 2.7e-06 55.5 61 50.8
HanXRQChr13g0404441 Helianthus annuus HOM05D007887 ORTHO05D009725 2.7e-06 55.5 66 40.9
BolC2t07271H Brassica oleracea HOM05D007887 ORTHO05D009725 3.6e-06 55.1 99 40.4
Carub.0008s2111 Capsella rubella HOM05D007887 ORTHO05D009725 6.1e-06 54.3 97 40.2
QL01p037342 Quercus lobata HOM05D000003 ORTHO05D011877 6.1e-06 54.3 45 64.4
Thhalv10015113m.g Eutrema salsugineum HOM05D007887 ORTHO05D009725 8.0e-06 53.9 97 40.2


User provided reference genes

Program Settings