Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 7.7e-59 230.3 121 100.0
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 3.5e-11 72.0 51 76.5
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 1.3e-10 70.1 51 68.6
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 2.3e-10 69.3 83 53.0
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 2.3e-10 69.3 83 53.0
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 5.1e-10 68.2 51 68.6
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 5.1e-10 68.2 51 70.6
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 8.6e-10 67.4 84 51.2
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 8.6e-10 67.4 84 51.2
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 8.6e-10 67.4 84 51.2
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 8.6e-10 67.4 84 51.2
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 8.6e-10 67.4 84 51.2
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 8.6e-10 67.4 84 51.2
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 1.5e-09 66.6 51 68.6
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 1.5e-09 66.6 62 58.1
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 5.6e-09 64.7 44 79.5
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 5.6e-09 64.7 46 71.7
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 7.3e-09 64.3 54 59.3
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 7.3e-09 64.3 51 62.7
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 9.5e-09 63.9 48 66.7
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.6e-08 63.2 51 62.7
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 2.1e-08 62.8 47 66.0
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.1e-08 62.8 41 78.0
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 2.1e-08 62.8 48 64.6
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 2.1e-08 62.8 54 59.3
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 2.1e-08 62.8 48 60.4
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 2.8e-08 62.4 48 68.8
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 2.8e-08 62.4 48 62.5
PGSC0003DMG400008051 Solanum tuberosum HOM05D006634 ORTHO05D008282 2.8e-08 62.4 70 48.6
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 3.6e-08 62.0 52 65.4
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 4.7e-08 61.6 85 44.7
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 4.7e-08 61.6 46 67.4
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 4.7e-08 61.6 48 64.6
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 6.2e-08 61.2 85 44.7
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 8.1e-08 60.8 51 60.8
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 8.1e-08 60.8 48 66.7
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 8.1e-08 60.8 49 59.2
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 1.1e-07 60.5 86 45.3
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 1.1e-07 60.5 82 46.3
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 1.1e-07 60.5 46 69.6
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 1.1e-07 60.5 48 62.5
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-07 60.1 52 63.5
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 1.4e-07 60.1 48 62.5
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 1.8e-07 59.7 97 41.2
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 3.1e-07 58.9 48 58.3
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 3.1e-07 58.9 48 62.5
Lj1A192T37 Lonicera japonica HOM05D006634 ORTHO05D008282 3.1e-07 58.9 41 70.7
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 3.1e-07 58.9 43 74.4
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 3.1e-07 58.9 41 73.2
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 4.0e-07 58.5 51 58.8
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 4.0e-07 58.5 48 60.4
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 4.0e-07 58.5 49 57.1
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 4.0e-07 58.5 40 70.0
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 4.0e-07 58.5 97 36.1
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 4.0e-07 58.5 55 56.4
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 5.2e-07 58.2 48 58.3
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 5.2e-07 58.2 48 58.3
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 5.2e-07 58.2 40 70.0
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 5.2e-07 58.2 51 56.9
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 5.2e-07 58.2 36 83.3
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 5.2e-07 58.2 41 73.2
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 5.2e-07 58.2 48 56.2
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 6.8e-07 57.8 46 60.9
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 6.8e-07 57.8 48 56.2
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 6.8e-07 57.8 48 60.4
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 6.8e-07 57.8 46 58.7
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 8.9e-07 57.4 97 40.2
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 8.9e-07 57.4 45 64.4
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 8.9e-07 57.4 45 64.4
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 8.9e-07 57.4 45 64.4
MBI10_g13399_MAGBIO Magnolia biondii HOM05D006634 ORTHO05D008282 8.9e-07 57.4 41 73.2
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 1.2e-06 57.0 46 58.7
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 1.5e-06 56.6 48 60.4
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 1.5e-06 56.6 41 68.3
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 1.5e-06 56.6 51 52.9
Sc06g0010190 Simmondsia chinensis HOM05D006634 ORTHO05D008282 1.5e-06 56.6 41 68.3
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 1.5e-06 56.6 48 60.4
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 1.5e-06 56.6 45 64.4
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 2.0e-06 56.2 48 56.2
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 2.6e-06 55.8 48 56.2
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 2.6e-06 55.8 65 49.2
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 3.4e-06 55.5 85 41.2
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 5.8e-06 54.7 49 55.1
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 7.6e-06 54.3 85 41.2
Nitab4.5_0014490g0010 Nicotiana tabacum HOM05D006634 ORTHO05D008282 7.6e-06 54.3 40 67.5
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 7.6e-06 54.3 48 54.2
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 9.9e-06 53.9 46 60.9
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 9.9e-06 53.9 48 56.2
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 9.9e-06 53.9 81 40.7


User provided reference genes

Program Settings