Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.9e-66 255.8 132 100.0
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 4.6e-57 224.6 132 88.6
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.1e-46 189.1 138 73.9
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.0e-40 170.2 137 65.7
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 4.8e-38 161.4 138 66.7
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.0e-37 157.1 130 60.8
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.0e-36 156.0 139 62.6
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.4e-36 155.2 138 62.3
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.4e-36 155.2 138 60.9
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.0e-35 153.7 138 60.1
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.0e-35 153.7 138 60.1
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.2e-35 152.5 138 59.4
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.8e-35 151.8 137 62.0
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 6.5e-35 151.0 138 59.4
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.5e-34 149.1 135 59.3
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 3.2e-34 148.7 138 58.7
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.6e-33 146.4 136 56.6
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.6e-33 146.4 138 54.3
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.0e-32 143.7 140 58.6
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.3e-32 143.3 138 53.6
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.3e-32 142.5 138 53.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.9e-32 141.7 130 56.9
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 5.1e-32 141.4 141 57.4
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 6.7e-32 141.0 139 56.8
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 6.7e-32 141.0 139 56.8
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.5e-31 139.0 139 54.7
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 4.3e-31 138.3 139 57.6
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 9.7e-31 137.1 138 56.5
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.3e-30 136.7 131 57.3
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.2e-30 136.0 140 55.0
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.2e-30 136.0 133 57.9
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 6.3e-30 134.4 140 53.6
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 6.3e-30 134.4 134 56.0
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 8.2e-30 134.0 144 53.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.1e-29 133.7 138 55.8
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.8e-29 132.9 139 55.4
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 3.1e-29 132.1 145 53.8
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 5.3e-29 131.3 140 53.6
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 6.9e-29 131.0 139 53.2
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-28 129.8 133 56.4
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.5e-28 129.8 141 53.9
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 2.0e-28 129.4 131 51.9
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 2.0e-28 129.4 151 48.3
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.0e-28 129.4 138 53.6
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 2.6e-28 129.0 140 53.6
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 2.6e-28 129.0 151 48.3
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.4e-28 128.6 132 54.5
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 3.4e-28 128.6 139 53.2
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 4.5e-28 128.3 137 53.3
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.0e-27 127.1 142 52.1
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.0e-27 127.1 129 53.5
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-27 126.7 141 53.2
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.3e-27 126.7 144 51.4
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.7e-27 126.3 129 56.6
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.9e-27 125.6 141 52.5
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 3.8e-27 125.2 124 51.6
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 3.8e-27 125.2 139 51.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 5.0e-27 124.8 140 50.7
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.1e-26 123.6 138 52.2
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.4e-26 123.2 138 51.4
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.4e-26 123.2 141 51.8
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 7.2e-26 120.9 136 52.9
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 7.2e-26 120.9 133 47.4
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 9.4e-26 120.6 133 49.6
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.1e-25 119.4 139 49.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 2.1e-25 119.4 144 49.3
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 7.9e-25 117.5 132 44.7
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.0e-24 117.1 129 51.2
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.3e-24 115.9 131 50.4
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.9e-24 115.2 139 48.9
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 8.8e-24 114.0 133 50.4
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.0e-23 112.8 126 46.8
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 7.4e-23 110.9 114 55.3
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.3e-22 110.2 123 45.5
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.3e-22 110.2 125 52.0
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.3e-22 110.2 138 45.7
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.7e-22 109.8 143 44.8
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.2e-22 109.4 134 44.8
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.2e-22 109.4 139 45.3
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 3.7e-22 108.6 136 47.8
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 6.3e-22 107.8 138 47.8
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.4e-21 106.7 112 58.9
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 2.4e-21 105.9 120 56.7
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.1e-21 105.5 138 44.2
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 5.3e-21 104.8 134 43.3
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 6.9e-21 104.4 125 45.6
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 9.1e-21 104.0 124 46.0
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 1.5e-20 103.2 145 42.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 7.7e-20 100.9 100 52.0
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.8e-19 98.6 98 52.0
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 8.5e-19 97.4 111 48.6
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 4.2e-18 95.1 137 45.3
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 5.5e-18 94.7 138 39.9
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 7.2e-18 94.4 144 44.4
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 7.2e-18 94.4 138 39.9
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.6e-17 93.2 138 39.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.7e-17 92.4 117 49.6
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.7e-17 92.4 117 49.6
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 8.0e-17 90.9 116 45.7
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.8e-16 89.7 115 43.5
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.8e-16 89.7 115 43.5
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.8e-16 89.7 115 43.5
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.8e-16 89.7 115 44.3
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.8e-16 89.7 118 44.9
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 2.3e-16 89.4 130 39.2
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 2.3e-16 89.4 115 47.0
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 3.0e-16 89.0 110 46.4
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 3.9e-16 88.6 119 43.7
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 6.7e-16 87.8 115 45.2
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 6.7e-16 87.8 126 39.7
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 8.8e-16 87.4 117 41.9
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 8.8e-16 87.4 115 42.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 8.8e-16 87.4 116 44.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.1e-15 87.0 123 41.5
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.5e-15 86.7 136 38.2
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.6e-15 85.9 99 53.5
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 3.3e-15 85.5 115 45.2
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 7.4e-15 84.3 115 43.5
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 7.4e-15 84.3 115 43.5
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 2.8e-14 82.4 133 39.1
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 3.7e-14 82.0 111 44.1
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.7e-14 82.0 115 43.5
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.7e-14 82.0 115 43.5
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 4.8e-14 81.6 115 42.6
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.8e-13 79.7 134 32.8
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 9.1e-13 77.4 108 40.7
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 7.7e-12 74.3 130 36.9
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 1.0e-11 73.9 130 36.2
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 2.2e-11 72.8 133 39.1
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 2.2e-11 72.8 133 39.1
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 8.5e-11 70.9 86 50.0
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.5e-10 70.1 139 32.4
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 4.2e-10 68.6 144 36.8
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 7.2e-10 67.8 143 35.0
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.6e-09 66.6 142 35.2
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 2.7e-09 65.9 141 36.2
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 2.7e-09 65.9 112 38.4
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 4.7e-09 65.1 109 40.4
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 3.0e-08 62.4 133 33.8
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 4.0e-08 62.0 131 35.1
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 4.0e-08 62.0 131 35.1
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 4.0e-08 62.0 134 38.1
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 6.7e-08 61.2 148 32.4
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 8.8e-08 60.8 150 31.3
Nitab4.5_0000196g0120 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-07 60.5 135 31.1
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 2.0e-07 59.7 134 37.3


User provided reference genes

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