Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 8.6e-293 1009.6 514 100.0
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.0e-245 853.2 444 96.8
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 2.4e-234 815.5 502 82.3
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.4e-210 736.5 599 65.6
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 5.3e-202 708.0 500 71.4
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 6.1e-198 694.5 499 71.3
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 6.8e-197 691.0 513 70.2
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 8.8e-197 690.6 508 70.3
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.3e-195 686.8 500 68.8
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.1e-194 683.7 504 69.8
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.2e-193 680.2 504 69.4
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.2e-193 680.2 504 69.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.0e-193 679.5 502 69.1
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.5e-193 678.7 504 69.2
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 5.9e-193 677.9 503 69.0
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 1.7e-192 676.4 500 70.6
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 5.0e-192 674.9 499 69.9
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.1e-191 673.7 503 70.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.5e-191 673.3 501 70.5
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.0e-189 667.2 500 68.6
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 2.0e-188 662.9 496 68.8
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 2.2e-187 659.4 501 67.1
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.4e-186 656.8 500 68.4
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.4e-186 656.8 497 69.4
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 4.1e-186 655.2 514 66.5
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 8.6e-184 647.5 499 67.7
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 2.5e-183 646.0 476 69.1
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.2e-182 643.7 491 68.2
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.2e-182 643.7 499 68.5
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.1e-182 642.9 513 65.5
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.7e-182 641.7 513 66.1
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.0e-181 638.6 499 68.1
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 8.9e-181 637.5 505 67.1
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 8.9e-181 637.5 502 66.1
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.2e-180 637.1 499 66.7
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 4.4e-180 635.2 500 67.2
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 6.4e-179 631.3 500 67.6
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 8.3e-179 630.9 510 65.9
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 5.4e-178 628.2 496 67.1
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 9.2e-178 627.5 518 64.5
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 9.2e-178 627.5 494 65.4
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.0e-176 624.0 455 71.2
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 7.3e-175 617.8 503 63.0
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 9.5e-175 617.5 504 63.1
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.1e-174 616.3 485 66.8
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.1e-173 614.0 499 65.5
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 3.1e-173 612.5 501 63.5
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.0e-172 609.8 497 63.2
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 4.4e-172 608.6 504 63.9
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 5.8e-172 608.2 501 63.7
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 2.4e-170 602.8 492 63.0
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 5.4e-170 601.7 505 62.4
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 6.0e-169 598.2 505 64.8
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 6.6e-168 594.7 492 62.4
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 8.6e-168 594.3 451 66.7
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.5e-167 593.6 492 62.4
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.6e-166 590.1 489 62.4
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.1e-165 587.4 508 60.4
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 2.3e-165 586.3 501 62.9
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.4e-164 582.0 479 63.7
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 9.9e-164 580.9 499 62.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.3e-163 580.5 495 62.4
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.0e-160 570.9 501 60.7
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 2.3e-160 569.7 510 58.6
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 6.6e-160 568.2 451 64.1
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.9e-159 566.6 451 65.2
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 5.6e-159 565.1 489 59.5
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 9.6e-159 564.3 474 61.0
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.2e-158 561.6 501 59.5
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 8.1e-158 561.2 444 65.8
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.1e-157 560.8 501 59.7
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.4e-157 560.5 502 58.6
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 3.1e-157 559.3 508 58.7
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 3.1e-157 559.3 508 58.7
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 6.8e-157 558.1 451 64.5
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 3.4e-156 555.8 500 60.0
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 9.9e-156 554.3 483 58.8
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 6.4e-155 551.6 468 61.5
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.9e-154 550.1 499 60.5
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.2e-153 547.4 442 62.9
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 3.5e-153 545.8 492 59.6
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 8.7e-152 541.2 508 57.5
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 4.3e-151 538.9 511 57.3
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 4.3e-151 538.9 511 56.9
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 9.6e-151 537.7 492 58.7
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 3.6e-150 535.8 448 63.4
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 3.6e-150 535.8 446 63.5
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.2e-148 530.8 518 54.8
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.4e-148 528.9 499 58.1
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 9.9e-148 527.7 511 56.6
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.3e-147 527.3 508 55.9
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 2.9e-147 526.2 502 56.4
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 6.4e-147 525.0 454 60.4
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 5.4e-146 521.9 517 56.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 7.1e-146 521.5 456 60.1
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 3.5e-145 519.2 454 60.4
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 8.7e-144 514.6 495 54.7
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.4e-141 507.3 509 54.0
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.8e-141 506.9 504 55.4
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.8e-141 506.9 486 56.8
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 3.1e-141 506.1 449 61.2
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 5.3e-141 505.4 499 54.9
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 4.5e-140 502.3 504 55.2
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 5.8e-140 501.9 504 55.2
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.3e-139 500.7 514 54.9
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.2e-137 494.2 500 52.6
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 4.6e-137 492.3 499 54.3
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.0e-136 491.1 425 62.1
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 2.3e-136 490.0 439 58.1
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.6e-134 483.8 434 62.0
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.6e-134 483.8 467 55.5
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 6.2e-134 481.9 396 64.6
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 8.1e-134 481.5 518 52.7
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.3e-128 464.2 507 51.1
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.5e-127 459.9 414 60.6
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-122 444.1 427 56.4
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.5e-119 433.3 483 51.8
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 8.2e-118 428.3 511 48.7
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.4e-117 427.6 327 63.9
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.0e-115 421.4 389 59.1
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.1e-106 391.3 436 52.8
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 5.5e-106 389.0 335 60.0
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 5.1e-104 382.5 361 59.0
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 5.7e-103 379.0 318 61.0
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.1e-93 348.2 425 44.9
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 4.1e-93 346.3 311 57.9
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.1e-89 334.0 219 72.1
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 8.8e-88 328.6 506 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.8e-86 323.6 497 39.6
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 2.8e-78 297.0 298 53.7
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 3.7e-78 296.6 255 57.6
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.9e-78 296.2 292 56.8
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 8.0e-73 278.9 332 46.7
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.9e-70 270.4 489 36.6
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 3.7e-70 270.0 196 68.4
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 4.6e-68 263.1 242 62.0
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 4.1e-53 213.4 196 58.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 3.0e-51 207.2 132 74.2
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 4.4e-39 166.8 306 34.0
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.0e-35 155.6 422 31.0
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 8.7e-35 152.5 165 50.9
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 5.3e-32 143.3 218 37.2
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 7.1e-29 132.9 104 59.6
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.7e-28 131.0 80 71.2
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-26 125.6 87 66.7
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 8.4e-22 109.4 172 40.7
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.4e-21 107.8 129 52.7
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 9.6e-18 95.9 67 65.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.4e-16 92.0 64 65.6
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 6.9e-16 89.7 64 64.1
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.3e-11 74.7 57 66.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 1.9e-10 71.6 49 63.3
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.0e-06 59.3 184 25.5
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 5.0e-06 57.0 65 44.6


User provided reference genes

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