Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 0.0e+00 1110.9 576 100.0
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.7e-239 831.2 537 84.5
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 6.1e-231 804.3 584 75.3
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.9e-227 792.7 552 77.5
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 2.1e-215 752.7 564 72.9
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.2e-213 746.9 565 71.7
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.3e-209 733.4 564 71.1
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 2.3e-209 732.6 553 70.5
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.0e-209 732.3 567 71.1
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 3.0e-209 732.3 550 71.5
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-208 730.3 567 70.9
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.3e-208 727.6 564 71.1
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 6.2e-207 724.5 563 70.7
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.4e-206 723.4 572 69.1
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 6.8e-206 721.1 563 69.4
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 8.9e-206 720.7 565 69.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-205 719.9 566 69.8
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.4e-203 713.4 552 68.8
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.9e-203 713.0 555 68.3
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.6e-202 709.9 574 67.4
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.6e-202 709.9 552 68.7
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.3e-201 706.1 539 70.1
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 6.6e-201 704.5 565 67.4
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 3.3e-200 702.2 565 67.3
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 4.7e-199 698.4 554 69.1
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 6.9e-198 694.5 553 68.7
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 2.6e-197 692.6 578 66.4
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.3e-196 690.3 561 66.5
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.8e-196 688.7 581 65.6
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 3.8e-196 688.7 549 67.9
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 6.4e-196 688.0 555 68.1
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.1e-195 687.2 554 66.8
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 4.2e-195 685.3 551 67.2
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 3.5e-194 682.2 563 64.3
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 8.7e-193 677.6 551 66.4
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.1e-192 677.2 563 64.5
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 4.3e-192 675.2 556 65.8
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.3e-191 673.7 572 65.6
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.3e-191 673.7 563 65.0
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.8e-191 672.5 547 66.5
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 2.8e-191 672.5 590 63.7
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-190 670.6 563 64.3
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.1e-190 670.6 551 66.8
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.8e-190 669.8 552 65.0
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.1e-190 669.1 563 63.9
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.0e-190 668.7 563 63.8
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 9.0e-190 667.5 563 63.4
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 9.0e-190 667.5 563 63.4
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 9.0e-190 667.5 563 63.6
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-189 666.8 563 63.2
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 2.0e-189 666.4 547 66.4
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 3.4e-189 665.6 550 66.4
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 2.2e-188 662.9 563 62.7
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 4.9e-188 661.8 589 63.5
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 4.9e-188 661.8 566 64.5
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.1e-187 660.6 552 64.1
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.4e-187 660.2 574 64.8
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.2e-187 659.1 553 63.7
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 3.2e-187 659.1 550 65.1
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 5.4e-187 658.3 547 66.0
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.7e-186 656.0 564 63.3
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 2.7e-186 656.0 564 63.5
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.6e-186 655.2 561 63.8
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 4.6e-186 655.2 552 65.2
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 6.0e-186 654.8 588 61.2
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 7.9e-186 654.4 564 63.3
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.3e-185 653.7 566 63.8
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 3.3e-184 649.0 564 63.1
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 4.3e-184 648.7 577 61.7
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 2.1e-183 646.4 552 65.0
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 3.1e-182 642.5 561 63.3
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 4.0e-182 642.1 552 64.7
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 5.3e-182 641.7 551 63.2
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 5.3e-182 641.7 560 63.6
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 3.8e-180 635.6 550 62.9
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 6.4e-180 634.8 563 62.0
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 2.5e-179 632.9 490 68.4
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.6e-178 630.2 564 61.9
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 5.1e-177 625.2 579 61.8
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 7.4e-176 621.3 572 61.5
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.3e-175 620.5 516 66.3
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 1.6e-175 620.2 552 60.9
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.4e-174 617.1 512 65.4
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.4e-174 617.1 503 65.4
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.4e-174 616.3 565 60.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 4.5e-173 612.1 551 62.1
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.0e-172 610.9 580 60.0
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.4e-171 607.1 549 61.9
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 4.2e-171 605.5 574 60.8
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 4.6e-170 602.1 592 58.4
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.0e-169 599.4 549 60.8
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.8e-167 592.8 556 60.8
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 5.3e-166 588.6 579 58.0
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.0e-164 584.3 504 61.7
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.7e-162 576.2 666 54.1
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.7e-162 576.2 543 59.7
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 6.7e-161 571.6 368 79.1
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 9.4e-155 551.2 447 68.2
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 2.0e-152 543.5 470 63.0
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 5.7e-152 542.0 552 57.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.2e-147 525.8 353 76.5
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.6e-146 523.9 564 53.4
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 3.0e-145 519.6 353 75.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 3.9e-145 519.2 553 55.3
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 8.2e-143 511.5 544 56.2
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.0e-141 506.9 555 53.0
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.3e-140 504.2 344 75.0
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 6.5e-132 475.3 407 64.6
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 3.2e-131 473.0 535 49.9
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 2.3e-129 466.8 461 56.8
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 9.5e-123 444.9 365 66.0
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.0e-116 424.9 329 67.5
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.5e-115 421.0 243 89.3
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 1.6e-114 417.5 242 86.4
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 1.6e-114 417.5 242 86.4
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.9e-110 404.1 483 49.7
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.4e-102 377.1 287 68.3
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.2e-102 376.7 232 81.5
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.2e-101 374.8 344 59.3
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 3.9e-100 369.8 413 52.3
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 6.6e-100 369.0 398 55.0
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.2e-98 364.8 457 50.3
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 7.6e-96 355.5 393 54.7
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.7e-95 353.2 192 91.7
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.2e-85 321.6 396 51.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 3.2e-78 297.0 159 88.7
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 2.5e-75 287.3 563 35.5
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.3e-74 285.0 361 48.2
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 3.8e-71 273.5 501 39.3
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.4e-70 269.6 320 48.4
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 9.3e-70 268.9 580 33.8
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 1.5e-64 251.5 143 87.4
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.5e-62 243.0 143 87.4
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 4.6e-61 240.0 180 71.1
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.0e-60 238.8 143 85.3
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.1e-58 231.1 134 87.3
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-57 227.3 128 89.8
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 3.2e-46 190.7 481 30.6
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-43 181.4 533 29.3
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.8e-36 156.0 88 88.6
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.8e-34 151.0 228 43.0
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.3e-33 146.7 92 80.4
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.3e-26 123.2 110 61.8
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 2.7e-24 117.9 257 34.2
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-23 115.5 157 47.8
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 3.8e-23 114.0 132 50.8
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.8e-23 114.0 165 44.8
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.2e-22 110.9 215 38.1
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.2e-18 98.2 258 29.1
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 6.3e-18 96.7 258 29.8
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.1e-17 94.0 52 88.5
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 1.1e-14 85.9 45 86.7
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 3.1e-09 67.8 323 25.7
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 4.3e-06 57.4 199 26.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 5.6e-06 57.0 32 90.6


User provided reference genes

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