Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23750 Corylus avellana HOM05D002375 ORTHO05D002457 7.8e-39 163.3 82 100.0
Cfa004154 Carpinus fangiana HOM05D002375 ORTHO05D002457 3.7e-20 101.3 55 89.1
Haze_15259 Corylus avellana HOM05D002375 ORTHO05D002457 4.8e-20 100.9 55 89.1
Haze_05350 Corylus avellana HOM05D002375 ORTHO05D002457 9.0e-19 96.7 55 85.5
CSS0047017 Camellia sinensis var. sinensis HOM05D002375 ORTHO05D002457 1.4e-11 72.8 63 60.3
Hma1.2p1_1760F.1_g301230 Hydrangea macrophylla HOM05D002375 ORTHO05D002457 3.1e-11 71.6 63 57.1
Hma1.2p1_2434F.1_g322110 Hydrangea macrophylla HOM05D002375 ORTHO05D002457 3.1e-11 71.6 63 57.1
PSO170G1094 Papaver somniferum HOM05D002375 ORTHO05D002457 1.2e-10 69.7 53 62.3
Prupe.6G217700 Prunus persica HOM05D002375 ORTHO05D002457 1.2e-10 69.7 63 57.1
PSO017G0559 Papaver somniferum HOM05D002375 ORTHO05D002457 3.4e-10 68.2 53 62.3
Ciclev10027588m.g Citrus clementina HOM05D002375 ORTHO05D002457 4.5e-10 67.8 63 55.6
QL06p039052 Quercus lobata HOM05D002375 ORTHO05D002457 7.6e-10 67.0 55 61.8
Manes.05G182900 Manihot esculenta HOM05D002375 ORTHO05D002457 1.0e-09 66.6 53 60.4
Atru.chr3.1052 Acer truncatum HOM05D002375 ORTHO05D002457 1.3e-09 66.2 53 64.2
CSS0001217 Camellia sinensis var. sinensis HOM05D002375 ORTHO05D002457 1.3e-09 66.2 63 54.0
TAR625G0719 Trochodendron aralioides HOM05D002375 ORTHO05D002457 2.2e-09 65.5 63 55.6
Manes.18G048600 Manihot esculenta HOM05D002375 ORTHO05D002457 2.9e-09 65.1 54 55.6
COL.COLO4_28473 Corchorus olitorius HOM05D002375 ORTHO05D002457 6.5e-09 63.9 54 57.4
TAR376G1100 Trochodendron aralioides HOM05D002375 ORTHO05D002457 6.5e-09 63.9 60 60.0
Cc07_g07310 Coffea canephora HOM05D002375 ORTHO05D002457 1.1e-08 63.2 57 57.9
TAR628G1128 Trochodendron aralioides HOM05D002375 ORTHO05D002457 1.1e-08 63.2 64 54.7
COL.COLO4_11606 Corchorus olitorius HOM05D002375 ORTHO05D002457 1.9e-08 62.4 56 53.6
SGA_v2.0_scaffold238G43916 Striga asiatica HOM05D002375 ORTHO05D002457 1.9e-08 62.4 70 47.1
SGA_v2.0_scaffold36G14261 Striga asiatica HOM05D002375 ORTHO05D002457 1.9e-08 62.4 70 47.1
Gohir.A06G024900 Gossypium hirsutum HOM05D002375 ORTHO05D002457 2.5e-08 62.0 53 52.8
Prupe.1G420200 Prunus persica HOM05D002375 ORTHO05D002457 2.5e-08 62.0 71 45.1
Thhalv10007757m.g Eutrema salsugineum HOM05D002375 ORTHO05D002457 4.2e-08 61.2 53 52.8
RcHm_v2.0_Chr2g0108551 Rosa chinensis HOM05D002375 ORTHO05D002457 4.2e-08 61.2 62 53.2
Gohir.D06G022000 Gossypium hirsutum HOM05D002375 ORTHO05D002457 5.5e-08 60.8 53 50.9
Gorai.010G026600 Gossypium raimondii HOM05D002375 ORTHO05D002457 5.5e-08 60.8 53 50.9
MD08G1079200 Malus domestica HOM05D002375 ORTHO05D002457 5.5e-08 60.8 70 45.7
TWI12G0823 Tripterygium wilfordii HOM05D002375 ORTHO05D002457 5.5e-08 60.8 58 53.4
Dinv39209 Davidia involucrata HOM05D002375 ORTHO05D002457 9.3e-08 60.1 78 42.3
MD02G1189000 Malus domestica HOM05D002375 ORTHO05D002457 1.2e-07 59.7 64 46.9
VMungo1215G2199 Vigna mungo HOM05D002375 ORTHO05D002457 1.2e-07 59.7 92 40.2
Eucgr.F00093 Eucalyptus grandis HOM05D002375 ORTHO05D002457 1.6e-07 59.3 53 54.7
FvH4_1g18080 Fragaria vesca HOM05D002375 ORTHO05D002457 1.6e-07 59.3 62 53.2
FAN19G2190 Fragaria x ananassa HOM05D002375 ORTHO05D002457 1.6e-07 59.3 62 53.2
FAN26G3473 Fragaria x ananassa HOM05D002375 ORTHO05D002457 1.6e-07 59.3 62 53.2
Nn5g30650 Nelumbo nucifera HOM05D002375 ORTHO05D002457 1.6e-07 59.3 64 48.4
Peaxi162Scf00548g00013 Petunia axillaris HOM05D002375 ORTHO05D002457 1.6e-07 59.3 53 58.5
THA.LOC104807051 Tarenaya hassleriana HOM05D002375 ORTHO05D002457 1.6e-07 59.3 56 51.8
TPR.G9325 Trifolium pratense HOM05D002375 ORTHO05D002457 1.6e-07 59.3 84 41.7
Cpa.g.sc129.75 Carica papaya HOM05D002375 ORTHO05D002457 2.1e-07 58.9 58 58.6
CiPaw.07G172900 Carya illinoinensis HOM05D002375 ORTHO05D002457 2.1e-07 58.9 73 45.2
Hma1.2p1_0210F.1_g089340 Hydrangea macrophylla HOM05D002375 ORTHO05D002457 2.1e-07 58.9 72 43.1
Phvul.002G009400 Phaseolus vulgaris HOM05D002375 ORTHO05D002457 2.1e-07 58.9 92 42.4
Psat5g037080 Pisum sativum HOM05D002375 ORTHO05D002457 2.1e-07 58.9 53 54.7
Thecc.08G085500 Theobroma cacao HOM05D002375 ORTHO05D002457 2.1e-07 58.9 54 53.7
CSS0007185 Camellia sinensis var. sinensis HOM05D002375 ORTHO05D002457 2.7e-07 58.5 65 46.2
CARHR010250 Cardamine hirsuta HOM05D002375 ORTHO05D002457 2.7e-07 58.5 53 50.9
Haze_22410 Corylus avellana HOM05D002375 ORTHO05D002457 2.7e-07 58.5 57 50.9
TWI74G0561 Tripterygium wilfordii HOM05D002375 ORTHO05D002457 2.7e-07 58.5 53 56.6
Psat2g172280 Pisum sativum HOM05D002375 ORTHO05D002457 3.5e-07 58.2 63 47.6
GSVIVG01009311001 Vitis vinifera HOM05D002375 ORTHO05D002457 3.5e-07 58.2 55 52.7
ClCG05G026600 Citrullus lanatus HOM05D002375 ORTHO05D002457 4.6e-07 57.8 64 50.0
Ciclev10001264m.g Citrus clementina HOM05D002375 ORTHO05D002457 4.6e-07 57.8 63 46.0
MD15G1066400 Malus domestica HOM05D002375 ORTHO05D002457 4.6e-07 57.8 71 42.3
CAN.G1343.1 Capsicum annuum HOM05D002375 ORTHO05D002457 6.1e-07 57.4 54 55.6
FAN23G1017 Fragaria x ananassa HOM05D002375 ORTHO05D002457 6.1e-07 57.4 62 51.6
VMungo1309G0439 Vigna mungo HOM05D002375 ORTHO05D002457 7.9e-07 57.0 53 54.7
Ah.03g140640 Amaranthus hybridus HOM05D002375 ORTHO05D002457 1.0e-06 56.6 63 50.8
Cfa013751 Carpinus fangiana HOM05D002375 ORTHO05D002457 1.0e-06 56.6 57 49.1
Glyma.01G195600 Glycine max HOM05D002375 ORTHO05D002457 1.0e-06 56.6 83 41.0
QL12p038412 Quercus lobata HOM05D002375 ORTHO05D002457 1.0e-06 56.6 53 47.2
Solyc02g092140.1 Solanum lycopersicum HOM05D002375 ORTHO05D002457 1.0e-06 56.6 53 52.8
Sopen02g036720 Solanum pennellii HOM05D002375 ORTHO05D002457 1.0e-06 56.6 53 52.8
Atru.chr13.860 Acer truncatum HOM05D002375 ORTHO05D002457 1.3e-06 56.2 63 44.4
CDE06G0565 Ceratophyllum demersum HOM05D002375 ORTHO05D002457 1.3e-06 56.2 53 60.4
Ca_15892_v3 Cicer arietinum L. HOM05D002375 ORTHO05D002457 1.3e-06 56.2 58 53.4
Glyma.11G046100 Glycine max HOM05D002375 ORTHO05D002457 1.3e-06 56.2 84 40.5
Lj4P164T31 Lonicera japonica HOM05D002375 ORTHO05D002457 1.3e-06 56.2 54 57.4
Lalb_Chr09g0323701 Lupinus albus HOM05D002375 ORTHO05D002457 1.3e-06 56.2 90 42.2
Lalb_Chr23g0267591 Lupinus albus HOM05D002375 ORTHO05D002457 1.3e-06 56.2 56 48.2
RcHm_v2.0_Chr6g0309911 Rosa chinensis HOM05D002375 ORTHO05D002457 1.3e-06 56.2 69 44.9
Sp1g08780 Schrenkiella parvula HOM05D002375 ORTHO05D002457 1.3e-06 56.2 53 52.8
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 1.8e-06 55.8 54 55.6
MELO3C016833.2 Cucumis melo HOM05D002375 ORTHO05D002457 1.8e-06 55.8 63 47.6
Duzib041G0064 Durio zibethinus HOM05D002375 ORTHO05D002457 1.8e-06 55.8 58 50.0
Duzib116G0799 Durio zibethinus HOM05D002375 ORTHO05D002457 1.8e-06 55.8 54 51.9
Thecc.01G075400 Theobroma cacao HOM05D002375 ORTHO05D002457 1.8e-06 55.8 59 47.5
CSS0016151 Camellia sinensis var. sinensis HOM05D002375 ORTHO05D002457 2.3e-06 55.5 65 46.2
CSS0022953 Camellia sinensis var. sinensis HOM05D002375 ORTHO05D002457 2.3e-06 55.5 65 46.2
CAN.G1239.5 Capsicum annuum HOM05D002375 ORTHO05D002457 2.3e-06 55.5 63 41.3
Ca_24673_v3 Cicer arietinum L. HOM05D002375 ORTHO05D002457 2.3e-06 55.5 95 38.9
Ca_30013_v3 Cicer arietinum L. HOM05D002375 ORTHO05D002457 2.3e-06 55.5 95 38.9
CsaV3_4G035220 Cucumis sativus L. HOM05D002375 ORTHO05D002457 2.3e-06 55.5 62 48.4
Medtr5g015150 Medicago truncatula HOM05D002375 ORTHO05D002457 2.3e-06 55.5 63 47.6
PGR102G2227 Punica granatum HOM05D002375 ORTHO05D002457 2.3e-06 55.5 53 54.7
CSS0008553 Camellia sinensis var. sinensis HOM05D002375 ORTHO05D002457 3.0e-06 55.1 55 52.7
Gohir.D01G111200 Gossypium hirsutum HOM05D002375 ORTHO05D002457 3.0e-06 55.1 54 48.1
Gohir.D11G210600 Gossypium hirsutum HOM05D002375 ORTHO05D002457 3.0e-06 55.1 55 54.5
Gorai.002G135800 Gossypium raimondii HOM05D002375 ORTHO05D002457 3.0e-06 55.1 54 48.1
Oeu021448.1 Olea europaea HOM05D002375 ORTHO05D002457 3.0e-06 55.1 64 50.0
Sc07g0000460 Simmondsia chinensis HOM05D002375 ORTHO05D002457 3.0e-06 55.1 57 54.4
Ah.11g039310 Amaranthus hybridus HOM05D002375 ORTHO05D002457 3.9e-06 54.7 72 43.1
CiPaw.08G051500 Carya illinoinensis HOM05D002375 ORTHO05D002457 3.9e-06 54.7 57 47.4
Glyma.04G047300 Glycine max HOM05D002375 ORTHO05D002457 3.9e-06 54.7 53 52.8
MBI16_g16471_MAGBIO Magnolia biondii HOM05D002375 ORTHO05D002457 3.9e-06 54.7 56 55.4
MBI16_g32088_MAGBIO Magnolia biondii HOM05D002375 ORTHO05D002457 3.9e-06 54.7 56 55.4
Oeu014277.1 Olea europaea HOM05D002375 ORTHO05D002457 3.9e-06 54.7 63 46.0
Peaxi162Scf00340g00042 Petunia axillaris HOM05D002375 ORTHO05D002457 3.9e-06 54.7 79 39.2
Potri.014G014100 Populus trichocarpa HOM05D002375 ORTHO05D002457 3.9e-06 54.7 53 50.9
arahy.Tifrunner.gnm1.ann1.SPB84A Arachis hypogaea HOM05D002375 ORTHO05D002457 5.1e-06 54.3 79 44.3
Carub.0001s0956 Capsella rubella HOM05D002375 ORTHO05D002457 5.1e-06 54.3 54 46.3
Cpa.g.sc142.55 Carica papaya HOM05D002375 ORTHO05D002457 5.1e-06 54.3 63 44.4
Gohir.A01G123400 Gossypium hirsutum HOM05D002375 ORTHO05D002457 5.1e-06 54.3 54 50.0
Nn6g34515 Nelumbo nucifera HOM05D002375 ORTHO05D002457 5.1e-06 54.3 63 47.6
TWI56G1019 Tripterygium wilfordii HOM05D002375 ORTHO05D002457 5.1e-06 54.3 58 51.7
vmacro04592 Vaccinium macrocarpon HOM05D002375 ORTHO05D002457 5.1e-06 54.3 57 49.1
vmacro18017 Vaccinium macrocarpon HOM05D002375 ORTHO05D002457 5.1e-06 54.3 54 57.4
Aqoxy6G02522 Aquilegia oxysepala HOM05D002375 ORTHO05D002457 6.7e-06 53.9 52 55.8
AL1G20840 Arabidopsis lyrata HOM05D002375 ORTHO05D002457 6.7e-06 53.9 54 48.1
EL10Ac6g15601 Beta vulgaris HOM05D002375 ORTHO05D002457 6.7e-06 53.9 64 48.4
Lj1g0003486 Lotus japonicus HOM05D002375 ORTHO05D002457 6.7e-06 53.9 52 53.8
Nitab4.5_0000036g0170 Nicotiana tabacum HOM05D002375 ORTHO05D002457 6.7e-06 53.9 54 53.7
Nitab4.5_0000142g0320 Nicotiana tabacum HOM05D002375 ORTHO05D002457 6.7e-06 53.9 53 52.8
Nitab4.5_0002796g0060 Nicotiana tabacum HOM05D002375 ORTHO05D002457 6.7e-06 53.9 63 42.9
Nitab4.5_0008663g0010 Nicotiana tabacum HOM05D002375 ORTHO05D002457 6.7e-06 53.9 53 52.8
Nitab4.5_0009491g0030 Nicotiana tabacum HOM05D002375 ORTHO05D002457 6.7e-06 53.9 63 42.9
PGR031G2368 Punica granatum HOM05D002375 ORTHO05D002457 6.7e-06 53.9 58 50.0
PGSC0003DMG400004913 Solanum tuberosum HOM05D002375 ORTHO05D002457 6.7e-06 53.9 63 39.7
Actinidia10218 Actinidia chinensis HOM05D002375 ORTHO05D002457 8.7e-06 53.5 75 40.0
CDE04G0381 Ceratophyllum demersum HOM05D002375 ORTHO05D002457 8.7e-06 53.5 53 58.5
Migut.C00398 Erythranthe guttata HOM05D002375 ORTHO05D002457 8.7e-06 53.5 69 43.5
Oeu058672.1 Olea europaea HOM05D002375 ORTHO05D002457 8.7e-06 53.5 64 46.9
PGSC0003DMG400021435 Solanum tuberosum HOM05D002375 ORTHO05D002457 8.7e-06 53.5 53 50.9
THA.LOC104825793 Tarenaya hassleriana HOM05D002375 ORTHO05D002457 8.7e-06 53.5 66 42.4


User provided reference genes

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