Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 1.1e-165 586.6 307 100.0
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 3.1e-88 329.3 307 62.2
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 8.4e-86 321.2 307 60.9
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.9e-85 320.1 360 56.4
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 3.2e-85 319.3 307 60.6
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 2.1e-84 316.6 307 59.9
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.5e-84 315.8 307 59.6
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 3.5e-84 315.8 307 59.6
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 6.0e-84 315.1 307 59.6
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.9e-84 314.7 307 59.3
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 1.0e-83 314.3 307 59.6
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 5.1e-83 312.0 307 58.6
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.9e-82 310.1 307 58.0
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 3.3e-82 309.3 307 57.7
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 7.4e-82 308.1 307 59.0
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 9.6e-82 307.8 307 58.6
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.6e-81 307.0 307 57.0
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 4.8e-81 305.4 307 58.0
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 8.1e-81 304.7 307 57.3
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.8e-80 303.5 312 57.7
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 2.4e-80 303.1 306 58.2
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 4.0e-80 302.4 307 57.7
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 5.3e-80 302.0 307 55.7
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 6.9e-80 301.6 307 58.0
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 9.0e-80 301.2 307 56.4
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 1.2e-79 300.8 307 56.4
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.5e-79 300.4 307 56.4
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 2.0e-79 300.1 307 56.7
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.0e-79 300.1 307 58.3
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 7.6e-79 298.1 307 56.0
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 7.6e-79 298.1 307 56.4
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 1.3e-78 297.4 307 56.7
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.2e-78 296.6 307 56.0
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.9e-78 296.2 307 57.0
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 8.4e-78 294.7 307 56.7
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 1.1e-77 294.3 307 55.4
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.4e-77 293.9 307 55.0
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.4e-77 293.9 307 55.0
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.4e-77 293.9 307 55.4
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 2.5e-77 293.1 307 55.0
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 3.2e-77 292.7 307 55.4
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 1.2e-76 290.8 307 55.0
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.1e-76 290.0 307 54.7
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.7e-76 289.7 307 55.4
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.5e-76 289.3 307 55.7
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 7.9e-76 288.1 307 55.4
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.3e-75 287.3 309 55.0
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 2.3e-75 286.6 307 54.1
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.3e-75 286.6 307 56.0
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 3.9e-75 285.8 307 54.7
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 5.1e-75 285.4 307 54.7
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 8.7e-75 284.6 307 53.7
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 8.7e-75 284.6 307 53.1
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 1.1e-74 284.3 309 54.0
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 2.5e-74 283.1 309 54.0
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 2.5e-74 283.1 309 54.0
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.5e-74 283.1 329 52.0
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 3.3e-74 282.7 307 54.7
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 4.3e-74 282.3 307 52.8
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 4.3e-74 282.3 307 55.4
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 5.7e-74 282.0 316 53.5
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.7e-74 282.0 307 55.0
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 9.6e-74 281.2 307 53.4
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.3e-73 280.8 307 53.4
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.3e-73 280.8 307 54.1
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.1e-72 277.7 307 53.4
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.1e-72 277.7 338 53.6
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.4e-72 277.3 307 52.8
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 1.2e-71 274.2 309 52.8
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 7.6e-71 271.6 307 52.4
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.7e-70 270.4 307 51.5
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 2.2e-70 270.0 295 53.6
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.9e-70 269.6 312 53.5
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 5.0e-70 268.9 307 52.4
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.1e-69 267.7 307 52.4
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.4e-69 267.3 308 51.9
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 3.2e-69 266.2 307 50.8
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 7.2e-69 265.0 307 51.8
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 9.3e-69 264.6 307 51.8
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 2.1e-68 263.5 307 51.5
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 7.9e-68 261.5 162 84.6
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.8e-67 260.4 307 50.2
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 1.1e-66 257.7 307 50.5
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.5e-66 257.3 308 50.6
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 4.3e-66 255.8 307 50.8
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 6.9e-64 248.4 307 47.9
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 9.1e-64 248.1 295 52.2
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 1.2e-63 247.7 307 49.8
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.5e-63 247.3 307 47.6
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 5.9e-63 245.4 307 47.2
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 7.7e-63 245.0 307 46.9
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 7.7e-63 245.0 307 47.2
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.3e-62 244.2 307 47.2
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.3e-62 244.2 294 49.7
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 2.2e-62 243.4 307 46.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 2.2e-62 243.4 307 48.9
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 2.9e-62 243.0 307 46.6
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 5.0e-62 242.3 307 46.9
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 6.5e-62 241.9 308 47.1
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 6.5e-62 241.9 307 46.9
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 8.5e-62 241.5 307 46.9
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 8.5e-62 241.5 307 46.9
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.4e-61 240.7 308 47.7
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 9.4e-61 238.0 307 45.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.1e-60 236.9 276 50.0
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.0e-59 234.6 307 45.9
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 2.3e-59 233.4 307 44.6
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.8e-57 225.7 258 51.9
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.1e-56 224.6 209 59.8
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.4e-56 224.2 307 46.6
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 2.6e-55 219.9 290 46.2
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.3e-54 217.6 141 78.0
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 4.2e-53 212.6 288 49.0
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.6e-52 210.7 138 76.8
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 5.7e-50 202.2 307 41.4
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 9.1e-48 194.9 117 82.9
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 9.1e-48 194.9 241 49.4
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 4.5e-47 192.6 241 48.5
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 3.8e-46 189.5 307 41.7
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.5e-45 187.6 138 65.9
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.1e-44 183.7 241 47.3
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 4.7e-44 182.6 307 38.4
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.3e-42 176.4 306 40.2
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 3.3e-42 176.4 111 79.3
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 8.2e-41 171.8 225 47.1
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 3.6e-36 156.4 311 34.7
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 4.0e-35 152.9 318 36.5
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.8e-33 146.7 141 54.6
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 1.8e-32 144.1 138 55.1
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 5.4e-32 142.5 318 35.2
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 1.2e-31 141.4 315 35.9
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.0e-30 138.3 315 35.2
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.8e-30 136.3 131 55.7
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.1e-29 134.8 216 41.7
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 9.5e-29 131.7 118 61.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 1.4e-27 127.9 216 39.8
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.5e-26 124.4 194 41.8
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.8e-25 120.2 110 55.5
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 8.6e-22 108.6 111 53.2
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.6e-20 104.4 128 49.2
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 5.2e-19 99.4 69 66.7
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 1.2e-18 98.2 71 63.4
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.8e-16 90.9 60 73.3
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.2e-16 90.1 54 87.0
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 3.5e-15 86.7 53 75.5
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.7e-14 84.3 63 61.9
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.0e-14 83.6 64 64.1
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 3.0e-14 83.6 115 43.5
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 3.0e-14 83.6 77 59.7
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.5e-13 80.5 46 84.8
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.8e-12 77.0 125 40.8
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 6.8e-11 72.4 61 54.1
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 2.6e-10 70.5 92 39.1
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 9.2e-08 62.0 40 77.5
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 9.2e-08 62.0 38 73.7
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 2.0e-07 60.8 50 54.0
Gohir.A12G148851 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.0e-07 59.3 64 57.8


User provided reference genes

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