Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 2442.9 1270 100.0
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 2267.3 1245 95.1
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1770.0 1210 77.2
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1727.2 1178 76.8
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1555.4 1199 69.3
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1530.4 1221 66.7
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1513.0 1223 65.8
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1495.3 1223 66.1
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1494.9 1233 66.9
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1488.0 1223 66.0
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1480.3 1231 66.1
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1479.5 1243 65.6
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1476.8 1251 65.6
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1475.7 1243 65.5
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1473.0 1183 67.1
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1468.0 1223 65.4
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1458.7 1224 66.5
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1456.8 1223 65.2
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1456.8 1279 64.0
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1456.4 1206 65.9
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1453.0 1290 63.3
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1446.4 1214 63.9
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1395.9 1224 63.7
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1390.2 1144 64.8
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1375.1 1181 63.1
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1372.1 1236 62.3
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1369.0 1220 62.6
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1358.6 1168 63.1
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1358.2 1228 62.1
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1358.2 1177 63.2
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1352.4 1228 61.9
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1349.7 1224 60.9
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1349.0 1233 59.9
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1344.7 1213 61.5
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1340.9 1215 61.5
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1333.2 1227 61.9
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1332.0 1168 62.1
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1323.5 1280 58.5
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1313.1 1222 60.6
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1313.1 1177 61.0
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1305.4 1082 66.8
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1303.5 1222 60.2
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1302.0 1217 61.7
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1299.6 1223 60.0
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1292.3 1183 60.9
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1265.0 1244 58.2
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1237.2 1236 56.4
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1225.7 1242 57.0
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1221.8 1169 57.2
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1204.9 1248 55.4
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1201.8 1261 55.0
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1200.7 1247 55.1
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1195.6 1216 56.6
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1192.6 1223 56.4
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1186.8 1244 55.1
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1180.6 1296 53.8
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1169.5 1213 55.0
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1157.1 1234 54.3
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1152.5 1002 63.5
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1141.3 1237 53.9
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1139.4 1187 54.7
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1110.9 1237 53.4
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 0.0e+00 1105.5 1232 52.7
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 1103.6 1236 53.9
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1102.4 1230 53.8
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1100.5 1174 53.1
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 0.0e+00 1092.8 1175 53.5
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 5.2e-307 1058.1 1278 49.1
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 2.0e-306 1056.2 1220 52.0
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 1.4e-304 1050.0 1189 51.6
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 1.5e-301 1040.0 1179 52.0
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 4.3e-301 1038.5 1213 51.1
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.2e-300 1036.9 836 69.3
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 1.3e-297 1026.9 1242 49.4
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 1.7e-297 1026.5 1235 49.9
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 7.1e-296 1021.1 1178 51.5
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.7e-286 989.9 1113 52.6
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 3.3e-285 985.7 1065 54.1
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 1.1e-283 980.7 1218 47.5
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 3.2e-280 969.1 1027 54.8
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 2.2e-273 946.4 765 66.5
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 6.6e-270 934.9 1291 46.3
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.9e-248 863.6 1181 44.2
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 4.2e-248 862.4 762 62.6
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 7.4e-245 851.7 1225 43.0
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 2.5e-240 836.6 1058 46.5
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.2e-212 743.8 1206 41.4
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 3.1e-211 740.0 983 44.5
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 7.3e-176 622.5 607 54.0
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 1.7e-169 601.3 1220 35.7
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 1.9e-163 581.3 1180 35.8
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 8.4e-148 529.3 1272 33.5
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.9e-147 528.1 1171 35.6
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 7.9e-130 469.5 625 47.5
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 8.7e-129 466.1 387 62.5
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 9.7e-112 409.5 386 57.0
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.2e-90 339.3 446 48.9
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 7.0e-86 323.6 510 40.0
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 6.2e-66 257.3 1282 27.2
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.1e-62 246.5 396 37.9
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.9e-54 219.2 203 59.1
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 4.2e-38 164.9 267 39.0
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.0e-36 160.2 269 37.9
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 9.0e-33 147.1 189 51.9
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 9.9e-32 143.7 123 58.5
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.4e-30 139.0 86 73.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 5.5e-30 137.9 171 53.2
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 1.3e-28 133.3 93 66.7
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.9e-27 129.4 121 60.3
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 4.8e-26 124.8 92 64.1
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 4.0e-25 121.7 148 49.3
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 5.5e-22 111.3 79 67.1
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.9e-20 105.1 82 61.0
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 3.8e-15 88.6 77 58.4
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 1.5e-08 66.6 139 30.2
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 2.2e-07 62.8 75 40.0


User provided reference genes

Program Settings