Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.3e-189 664.8 324 100.0
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.8e-105 385.6 339 66.1
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 4.0e-94 349.0 322 64.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 3.2e-75 286.2 191 77.0
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 4.0e-70 269.2 174 81.6
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 9.9e-69 264.6 159 86.2
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 9.9e-69 264.6 188 76.1
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.4e-67 258.8 207 64.7
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.9e-65 252.7 204 66.2
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 8.6e-65 251.5 185 74.1
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 4.3e-64 249.2 214 62.1
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.0e-61 240.4 191 66.0
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 9.9e-61 238.0 204 63.7
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.3e-60 237.7 201 62.7
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 8.4e-60 235.0 159 77.4
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 8.4e-60 235.0 201 62.2
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.1e-59 234.6 203 62.1
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.9e-59 233.8 191 62.3
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.4e-59 233.4 203 62.6
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.2e-58 231.1 194 64.9
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-58 231.1 201 61.2
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.1e-58 230.3 192 63.5
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 7.8e-58 228.4 191 64.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 5.1e-57 225.7 202 60.9
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.1e-56 224.6 204 59.8
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.9e-56 223.8 204 59.8
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 2.5e-56 223.4 194 61.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.5e-56 223.4 191 62.8
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 4.3e-56 222.6 201 62.2
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 9.6e-56 221.5 222 55.0
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.6e-55 220.7 201 60.2
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 6.2e-55 218.8 200 61.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 8.1e-55 218.4 203 59.6
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.1e-54 218.0 191 59.7
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.4e-54 217.6 191 60.2
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.4e-54 217.6 204 58.3
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.8e-54 217.2 204 59.3
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.8e-54 217.2 204 59.3
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 5.3e-54 215.7 191 59.7
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 6.9e-54 215.3 191 59.7
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 6.9e-54 215.3 192 59.4
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.6e-53 213.4 203 57.1
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 2.6e-53 213.4 191 58.6
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 4.4e-53 212.6 192 60.9
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 2.9e-52 209.9 204 55.9
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 3.2e-51 206.5 192 56.8
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 9.3e-51 204.9 197 57.9
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 4.6e-50 202.6 202 55.0
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 8.7e-49 198.4 207 56.5
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 8.7e-49 198.4 192 58.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 9.6e-48 194.9 202 53.0
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.3e-47 194.5 208 54.3
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 6.2e-47 192.2 202 53.5
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.2e-47 192.2 202 52.0
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 4.0e-46 189.5 191 55.5
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 5.3e-46 189.1 203 53.7
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 9.0e-46 188.3 203 53.2
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 2.0e-45 187.2 203 56.7
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.0e-45 187.2 190 54.2
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 2.6e-45 186.8 238 47.1
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 7.6e-45 185.3 202 49.0
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 9.9e-45 184.9 204 49.0
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.8e-44 183.0 198 53.0
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.4e-44 182.2 202 49.5
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 6.4e-44 182.2 205 54.1
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 8.4e-44 181.8 190 56.3
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.7e-42 176.8 194 53.1
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 4.6e-42 176.0 191 51.3
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.3e-41 173.7 201 45.3
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.1e-40 171.4 202 48.5
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.5e-40 171.0 205 50.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.9e-40 170.6 203 52.2
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.5e-40 170.2 191 47.1
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 3.3e-40 169.9 203 49.8
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.3e-39 167.9 200 51.5
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.6e-39 167.5 191 46.6
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.1e-39 167.2 203 48.8
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 2.8e-39 166.8 203 49.8
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.8e-39 166.8 193 50.3
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.8e-39 166.8 193 50.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 4.8e-39 166.0 191 47.1
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.8e-38 164.1 191 46.1
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 9.0e-38 161.8 193 46.1
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.2e-37 161.4 190 50.5
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.4e-37 159.8 203 50.2
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 7.6e-37 158.7 193 45.6
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.2e-36 157.1 192 48.4
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.8e-36 156.4 192 49.0
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.4e-35 154.5 163 49.7
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.5e-35 153.7 192 43.8
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 2.5e-35 153.7 192 43.8
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 3.2e-35 153.3 205 42.0
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 5.5e-35 152.5 193 44.0
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 9.3e-35 151.8 198 51.5
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.7e-34 150.2 192 47.9
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.6e-34 149.4 146 55.5
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.6e-34 149.4 215 45.6
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 6.0e-34 149.1 197 44.2
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 7.9e-34 148.7 205 43.4
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 7.9e-34 148.7 191 44.5
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.0e-33 148.3 201 44.3
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.3e-33 147.9 193 43.0
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.3e-33 147.1 191 46.1
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 8.7e-33 145.2 120 66.7
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.5e-32 144.4 190 43.7
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.9e-32 144.1 191 47.1
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 3.3e-32 143.3 203 46.3
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.6e-31 141.0 152 48.0
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.1e-31 140.6 193 46.6
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 2.8e-31 140.2 175 48.0
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 3.1e-30 136.7 203 43.3
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 4.5e-29 132.9 205 38.5
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.7e-28 131.0 200 43.0
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 8.4e-28 128.6 191 44.0
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.4e-27 127.9 223 39.0
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.2e-27 126.7 203 41.4
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.7e-23 113.2 124 51.6
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.8e-23 112.8 70 88.6
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.4e-22 110.5 208 37.0
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 6.5e-20 102.4 204 38.7
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.9e-19 100.9 209 34.4
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.6e-18 97.8 191 35.6
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.6e-18 97.8 201 35.3
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.6e-18 97.8 191 35.6
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 3.9e-17 93.2 208 31.7
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.7e-17 92.4 213 34.3
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.4e-11 74.7 71 50.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.7e-07 61.2 49 61.2


User provided reference genes

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