Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23557 Corylus avellana HOM05D000474 ORTHO05D034908 1.2e-57 226.1 104 100.0
Haze_07860 Corylus avellana HOM05D000474 ORTHO05D008385 4.9e-30 134.4 66 87.9
TAR629G3019 Trochodendron aralioides HOM05D000474 ORTHO05D008385 1.5e-23 112.8 67 68.7
Cpa.g.sc29.130 Carica papaya HOM05D000474 ORTHO05D008385 2.6e-23 112.1 80 60.0
Hma1.2p1_1720F.1_g299260 Hydrangea macrophylla HOM05D000474 ORTHO05D008385 2.6e-23 112.1 81 59.3
Aqoxy7G00726 Aquilegia oxysepala HOM05D000474 ORTHO05D008385 3.4e-23 111.7 69 69.6
CiPaw.12G107000 Carya illinoinensis HOM05D000474 ORTHO05D008385 4.5e-23 111.3 66 71.2
Eucgr.E00459 Eucalyptus grandis HOM05D000474 ORTHO05D008385 4.5e-23 111.3 72 68.1
VMungo1215G1274 Vigna mungo HOM05D000474 ORTHO05D008385 4.5e-23 111.3 69 66.7
Lalb_Chr12g0196561 Lupinus albus HOM05D000474 ORTHO05D008385 7.6e-23 110.5 66 71.2
Sed0019568 Sechium edule HOM05D000474 ORTHO05D008385 1.3e-22 109.8 66 68.2
Duzib068G0146 Durio zibethinus HOM05D000474 ORTHO05D008385 2.2e-22 109.0 66 69.7
Lj4g0015288 Lotus japonicus HOM05D000474 ORTHO05D008385 2.9e-22 108.6 70 64.3
Thecc.03G256600 Theobroma cacao HOM05D000474 ORTHO05D008385 2.9e-22 108.6 66 69.7
CSS0032951 Camellia sinensis var. sinensis HOM05D000474 ORTHO05D008385 3.8e-22 108.2 81 58.0
COL.COLO4_37210 Corchorus olitorius HOM05D000474 ORTHO05D008385 3.8e-22 108.2 66 69.7
Dinv39107 Davidia involucrata HOM05D000474 ORTHO05D008385 5.0e-22 107.8 62 72.6
TAR636G1046 Trochodendron aralioides HOM05D000474 ORTHO05D008385 8.4e-22 107.1 65 70.8
CiPaw.11G150800 Carya illinoinensis HOM05D000474 ORTHO05D008385 1.1e-21 106.7 80 58.8
Glyma.17G025900 Glycine max HOM05D000474 ORTHO05D008385 1.1e-21 106.7 65 67.7
CANSAT21G0566 Cannabis sativa HOM05D000474 ORTHO05D008385 1.4e-21 106.3 80 58.8
Duzib205G0594 Durio zibethinus HOM05D000474 ORTHO05D008385 3.2e-21 105.1 66 66.7
Gohir.D03G161000 Gossypium hirsutum HOM05D000474 ORTHO05D008385 3.2e-21 105.1 66 66.7
Gorai.003G169500 Gossypium raimondii HOM05D000474 ORTHO05D008385 3.2e-21 105.1 66 66.7
Gohir.A03G009700 Gossypium hirsutum HOM05D000474 ORTHO05D008385 4.2e-21 104.8 66 66.7
Phvul.003G104800 Phaseolus vulgaris HOM05D000474 ORTHO05D008385 4.2e-21 104.8 69 63.8
Thhalv10025220m.g Eutrema salsugineum HOM05D000474 ORTHO05D008385 5.5e-21 104.4 67 64.2
Prupe.5G075200 Prunus persica HOM05D000474 ORTHO05D008385 5.5e-21 104.4 66 63.6
PGR042G1461 Punica granatum HOM05D000474 ORTHO05D008385 5.5e-21 104.4 80 56.2
GSVIVG01001277001 Vitis vinifera HOM05D000474 ORTHO05D008385 5.5e-21 104.4 66 62.1
BcaC09g51126 Brassica carinata HOM05D000474 ORTHO05D008385 7.2e-21 104.0 67 64.2
A01p13860 Brassica napus HOM05D000474 ORTHO05D008385 7.2e-21 104.0 67 64.2
C01p16870 Brassica napus HOM05D000474 ORTHO05D008385 7.2e-21 104.0 67 64.2
BolC1t01628H Brassica oleracea HOM05D000474 ORTHO05D008385 7.2e-21 104.0 67 64.2
BraA01t01332Z Brassica rapa HOM05D000474 ORTHO05D008385 7.2e-21 104.0 67 64.2
MBI11_g24609_MAGBIO Magnolia biondii HOM05D000474 ORTHO05D008385 7.2e-21 104.0 66 68.2
PSO017G3997 Papaver somniferum HOM05D000474 ORTHO05D008385 7.2e-21 104.0 66 69.7
PSO170G1943 Papaver somniferum HOM05D000474 ORTHO05D008385 7.2e-21 104.0 66 69.7
QL12p013413 Quercus lobata HOM05D000474 ORTHO05D008385 7.2e-21 104.0 67 65.7
GSVIVG01004778001 Vitis vinifera HOM05D000474 ORTHO05D008385 7.2e-21 104.0 66 62.1
BcaC09g51127 Brassica carinata HOM05D000474 ORTHO05D008385 9.3e-21 103.6 67 64.2
HanXRQChr02g0049431 Helianthus annuus HOM05D000474 ORTHO05D008385 9.3e-21 103.6 69 62.3
ClCG10G002980 Citrullus lanatus HOM05D000474 ORTHO05D008385 1.2e-20 103.2 66 63.6
Aa31LG6G4570 Aethionema arabicum HOM05D000474 ORTHO05D008385 1.6e-20 102.8 67 64.2
Carub.0007s1873 Capsella rubella HOM05D000474 ORTHO05D008385 1.6e-20 102.8 67 62.7
RcHm_v2.0_Chr7g0202381 Rosa chinensis HOM05D000474 ORTHO05D008385 1.6e-20 102.8 65 61.5
Dinv21606 Davidia involucrata HOM05D000474 ORTHO05D008385 2.1e-20 102.4 62 66.1
Lj2A212T44 Lonicera japonica HOM05D000474 ORTHO05D008385 2.1e-20 102.4 63 66.7
TPR.G40731 Trifolium pratense HOM05D000474 ORTHO05D008385 2.1e-20 102.4 80 56.2
Ca_21507_v3 Cicer arietinum L. HOM05D000474 ORTHO05D008385 3.5e-20 101.7 80 57.5
Psat4g025760 Pisum sativum HOM05D000474 ORTHO05D008385 3.5e-20 101.7 80 57.5
THA.LOC104813713 Tarenaya hassleriana HOM05D000474 ORTHO05D008385 3.5e-20 101.7 80 56.2
MELO3C013968.2 Cucumis melo HOM05D000474 ORTHO05D008385 4.6e-20 101.3 66 62.1
CsaV3_3G003020 Cucumis sativus L. HOM05D000474 ORTHO05D008385 4.6e-20 101.3 66 62.1
Sp7g20620 Schrenkiella parvula HOM05D000474 ORTHO05D008385 6.1e-20 100.9 67 62.7
Atru.chr9.1376 Acer truncatum HOM05D000474 ORTHO05D008385 7.9e-20 100.5 80 53.8
FvH4_5g00260 Fragaria vesca HOM05D000474 ORTHO05D008385 7.9e-20 100.5 65 60.0
FAN08G1446 Fragaria x ananassa HOM05D000474 ORTHO05D008385 7.9e-20 100.5 65 60.0
FAN13G1990 Fragaria x ananassa HOM05D000474 ORTHO05D008385 7.9e-20 100.5 65 60.0
FAN18G0322 Fragaria x ananassa HOM05D000474 ORTHO05D008385 7.9e-20 100.5 65 60.0
Manes.02G036100 Manihot esculenta HOM05D000474 ORTHO05D008385 1.0e-19 100.1 66 65.2
Medtr4g119810 Medicago truncatula HOM05D000474 ORTHO05D008385 1.3e-19 99.8 81 53.1
SalBow6G6726 Salvia bowleyana HOM05D000474 ORTHO05D008385 1.3e-19 99.8 81 55.6
AL7G31010 Arabidopsis lyrata HOM05D000474 ORTHO05D008385 1.8e-19 99.4 67 61.2
AT4G22580 Arabidopsis thaliana HOM05D000474 ORTHO05D008385 1.8e-19 99.4 67 61.2
CARHR229470 Cardamine hirsuta HOM05D000474 ORTHO05D008385 1.8e-19 99.4 67 61.2
Migut.A00809 Erythranthe guttata HOM05D000474 ORTHO05D008385 1.8e-19 99.4 82 53.7
CAN.G1217.14 Capsicum annuum HOM05D000474 ORTHO05D008385 2.3e-19 99.0 81 53.1
Cc08_g12890 Coffea canephora HOM05D000474 ORTHO05D008385 2.3e-19 99.0 81 55.6
Lsat_1_v5_gn_6_1901 Lactuca sativa HOM05D000474 ORTHO05D008385 2.3e-19 99.0 70 60.0
MD09G1022700 Malus domestica HOM05D000474 ORTHO05D008385 2.3e-19 99.0 67 61.2
Nitab4.5_0009716g0020 Nicotiana tabacum HOM05D000474 ORTHO05D008385 3.0e-19 98.6 67 67.2
FAN04G0320 Fragaria x ananassa HOM05D000474 ORTHO05D008385 3.9e-19 98.2 65 58.5
Nitab4.5_0000993g0060 Nicotiana tabacum HOM05D000474 ORTHO05D008385 3.9e-19 98.2 67 67.2
Oeu011658.1 Olea europaea HOM05D000474 ORTHO05D008385 3.9e-19 98.2 81 54.3
unitig_744.g24462 Utricularia gibba HOM05D000474 ORTHO05D008385 6.7e-19 97.4 81 55.6
Ciclev10020110m.g Citrus clementina HOM05D000474 ORTHO05D008385 8.7e-19 97.1 80 53.8
MD04G1084800 Malus domestica HOM05D000474 ORTHO05D008385 8.7e-19 97.1 66 62.1
MSTRG.12077 Avicennia marina HOM05D000474 ORTHO05D008385 1.5e-18 96.3 81 54.3
CSS0005579 Camellia sinensis var. sinensis HOM05D000474 ORTHO05D008385 1.5e-18 96.3 66 62.1
CDE01G0263 Ceratophyllum demersum HOM05D000474 ORTHO05D008385 1.9e-18 95.9 66 62.1
CDE12G0274 Ceratophyllum demersum HOM05D000474 ORTHO05D008385 1.9e-18 95.9 66 62.1
Peaxi162Scf00002g00092 Petunia axillaris HOM05D000474 ORTHO05D008385 2.5e-18 95.5 67 62.7
Sc01g0009350 Simmondsia chinensis HOM05D000474 ORTHO05D008385 4.3e-18 94.7 80 50.0
DCAR_004927 Daucus carota HOM05D000474 ORTHO05D008385 5.7e-18 94.4 61 63.9
Potri.001G120800 Populus trichocarpa HOM05D000474 ORTHO05D008385 7.4e-18 94.0 66 59.1
Sabra01G0093200 Salix brachista HOM05D000474 ORTHO05D008385 7.4e-18 94.0 66 59.1
SHI27542 Sapria himalayana HOM05D000474 ORTHO05D008385 9.7e-18 93.6 66 56.1
Solyc08g079040.1 Solanum lycopersicum HOM05D000474 ORTHO05D008385 9.7e-18 93.6 67 62.7
Sopen08g027500 Solanum pennellii HOM05D000474 ORTHO05D008385 9.7e-18 93.6 67 62.7
PGSC0003DMG400004742 Solanum tuberosum HOM05D000474 ORTHO05D008385 9.7e-18 93.6 67 62.7
Rhsim07G0105000 Rhododendron simsii HOM05D000474 ORTHO05D008385 1.3e-17 93.2 66 59.1
CAN.G1217.15 Capsicum annuum HOM05D000474 ORTHO05D008385 1.6e-17 92.8 81 49.4
TWI60G1690 Tripterygium wilfordii HOM05D000474 ORTHO05D008385 1.6e-17 92.8 66 59.1
AUR62007479 Chenopodium quinoa HOM05D000474 ORTHO05D008385 1.8e-16 89.4 89 47.2
AUR62039935 Chenopodium quinoa HOM05D000474 ORTHO05D008385 3.1e-16 88.6 89 47.2
Potri.003G112200 Populus trichocarpa HOM05D000474 ORTHO05D008385 2.0e-15 85.9 66 54.5
ECA233G4529 Erigeron canadensis HOM05D000474 ORTHO05D008385 2.6e-15 85.5 65 55.4
Lj8P258T40 Lonicera japonica HOM05D000474 ORTHO05D008385 2.6e-15 85.5 44 75.0
Hund11581 Selenicereus undatus HOM05D000474 ORTHO05D008385 2.6e-15 85.5 69 53.6
Ah.12g056500 Amaranthus hybridus HOM05D000474 ORTHO05D008385 5.0e-14 81.3 88 46.6
MD06G1063600 Malus domestica HOM05D000474 ORTHO05D034908 6.5e-14 80.9 66 53.0
HPP92_022308 Vanilla planifolia HOM05D000474 ORTHO05D008385 1.1e-13 80.1 73 50.7
ATR0001G033 Amborella trichopoda HOM05D000474 ORTHO05D008385 5.7e-10 67.8 78 35.9
EL10Ac5g13013 Beta vulgaris HOM05D000474 ORTHO05D008385 3.7e-09 65.1 79 41.8
Zm00001eb049680 Zea mays HOM05D000474 ORTHO05D008385 3.7e-09 65.1 67 46.3
Os10g0553600 Oryza sativa ssp. japonica HOM05D000474 ORTHO05D008385 4.8e-09 64.7 73 45.2
Zm00001eb000410 Zea mays HOM05D000474 ORTHO05D008385 6.9e-08 60.8 58 44.8


User provided reference genes

Program Settings