Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 0.0e+00 1183.7 601 100.0
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.1e-306 1055.0 624 88.6
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.4e-262 909.4 623 75.9
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.3e-255 886.3 615 74.1
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.6e-251 870.9 613 73.1
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 7.1e-246 854.0 621 72.0
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.0e-244 848.6 615 71.5
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.1e-241 840.1 624 70.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 2.6e-240 835.5 617 71.0
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 7.1e-238 827.4 546 78.4
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 6.0e-237 824.3 626 69.0
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 6.6e-236 820.8 815 58.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 4.3e-235 818.1 644 67.4
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.2e-234 816.6 614 69.7
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 3.4e-232 808.5 623 68.2
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.4e-232 808.5 623 67.3
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.9e-231 805.4 623 67.1
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.9e-231 805.4 623 66.8
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 6.4e-231 804.3 623 66.9
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.6e-229 799.7 615 67.3
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.6e-229 798.1 627 67.5
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 6.0e-229 797.7 623 65.7
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.0e-228 797.0 625 67.8
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.7e-223 779.6 616 67.2
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.7e-223 779.6 620 66.1
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.1e-222 776.9 623 65.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.4e-222 775.8 548 73.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 7.1e-222 774.2 615 66.3
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.6e-221 773.1 620 65.6
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.7e-221 772.3 618 64.9
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.7e-221 772.3 619 65.6
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 8.7e-220 767.3 615 65.0
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.1e-217 760.4 619 64.1
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.4e-217 759.2 630 63.5
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 6.9e-217 757.7 620 63.7
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.5e-216 756.5 615 64.1
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.6e-216 755.7 620 65.0
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.4e-216 755.4 613 65.1
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-215 753.4 620 64.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 4.2e-214 748.4 625 64.3
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.2e-213 746.9 619 63.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.6e-213 745.0 620 64.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 6.0e-213 744.6 630 62.7
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-212 743.4 620 64.0
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.8e-212 743.0 623 62.1
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 5.1e-212 741.5 613 62.5
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 6.7e-212 741.1 621 62.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 6.7e-212 741.1 623 63.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 7.4e-211 737.6 613 65.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.3e-210 736.9 621 63.8
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.8e-210 734.9 617 64.0
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 6.2e-210 734.6 616 61.2
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 8.1e-210 734.2 615 61.1
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.4e-209 733.4 621 62.5
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.8e-209 733.0 631 61.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 5.3e-209 731.5 625 63.4
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 6.9e-209 731.1 622 62.5
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.5e-208 729.9 634 62.0
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.0e-208 729.6 628 60.5
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.6e-208 729.2 618 60.8
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.4e-206 723.4 617 60.0
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.9e-206 723.0 608 61.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 7.1e-206 721.1 617 59.8
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 7.1e-206 721.1 631 61.6
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 9.3e-206 720.7 620 59.7
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 2.1e-205 719.5 625 59.2
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.1e-205 719.5 608 60.7
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 4.6e-205 718.4 631 61.5
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 7.9e-205 717.6 620 59.4
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 7.9e-205 717.6 631 61.0
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.0e-204 717.2 625 59.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 3.9e-204 715.3 630 59.4
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 8.7e-204 714.1 624 62.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.5e-203 713.4 542 67.0
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 9.6e-203 710.7 617 58.8
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 6.9e-201 704.5 602 60.0
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 5.9e-200 701.4 675 57.8
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.1e-198 697.2 599 62.4
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.0e-196 690.6 600 59.3
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.3e-196 690.3 614 59.4
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 3.0e-196 689.1 601 59.2
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 4.3e-195 685.3 603 60.7
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 4.6e-189 665.2 550 61.1
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 7.9e-189 664.5 574 63.6
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 2.4e-185 652.9 614 58.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.4e-182 643.7 623 58.1
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 9.4e-182 641.0 588 58.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.0e-180 636.0 619 55.6
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.1e-179 634.0 512 63.3
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.7e-175 620.2 629 53.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 5.5e-174 615.1 620 53.4
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.0e-172 610.9 614 52.8
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 4.0e-172 609.0 515 61.9
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.7e-154 550.4 496 61.1
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.6e-152 543.9 597 48.2
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.6e-147 526.6 382 71.5
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.8e-140 503.8 637 47.9
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.9e-130 469.2 382 62.6
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 9.9e-115 418.3 532 43.8
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-114 417.9 473 47.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.9e-113 414.1 330 65.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.1e-110 404.8 598 41.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.1e-109 400.6 571 41.3
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 9.3e-105 385.2 335 60.9
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.8e-101 372.9 255 74.1
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 9.9e-99 365.2 574 38.5
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.5e-96 356.7 381 51.2
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.8e-84 317.8 242 68.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 9.0e-84 315.5 258 61.2
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.3e-79 300.8 242 66.9
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.5e-67 261.5 172 77.9
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.4e-67 260.4 207 67.6
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 2.9e-66 257.3 609 29.7
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.0e-66 256.5 292 43.2
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.5e-65 253.1 363 37.2
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 3.8e-42 177.2 138 65.2
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 9.5e-41 172.6 123 65.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.7e-37 161.8 116 72.4
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.2e-35 155.6 107 72.9
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.5e-27 127.5 176 40.9
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.7e-26 125.2 92 69.6
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.9e-25 121.7 75 77.3
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.1e-24 118.2 129 48.8
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.6e-24 117.5 258 36.4
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 6.2e-24 116.7 371 27.5
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 6.8e-23 113.2 124 43.5
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 2.4e-20 104.8 154 40.3
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 3.5e-19 100.9 357 24.9
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 2.3e-18 98.2 81 56.8
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 6.6e-18 96.7 173 38.7
CiPaw.14G108200 Carya illinoinensis HOM05D005072 ORTHO05D006209 8.9e-15 86.3 75 61.3
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 1.7e-13 82.0 55 67.3
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.7e-13 82.0 55 67.3
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 2.2e-13 81.6 55 67.3
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 2.9e-13 81.3 85 47.1
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.4e-12 79.0 129 38.0
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.4e-12 78.2 58 69.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 1.0e-10 72.8 202 27.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-10 72.0 50 64.0
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 5.6e-09 67.0 82 48.8
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 5.6e-09 67.0 137 34.3
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 3.1e-07 61.2 66 45.5
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 2.0e-06 58.5 47 57.4
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 5.8e-06 57.0 41 65.9
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 5.8e-06 57.0 72 47.2


User provided reference genes

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