Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 2.0e-95 352.4 176 100.0
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 5.4e-37 158.3 96 80.2
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 7.1e-37 157.9 95 81.1
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 8.4e-30 134.4 96 69.8
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 8.1e-25 117.9 93 62.4
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 3.1e-24 115.9 93 61.3
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 5.8e-23 111.7 95 58.9
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.8e-22 109.0 95 56.8
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 4.9e-22 108.6 107 53.3
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 1.1e-21 107.5 98 58.2
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.4e-21 106.3 95 56.8
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 3.2e-21 105.9 92 62.0
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.2e-21 105.5 74 67.6
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 5.4e-21 105.1 98 53.1
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.4e-21 105.1 97 52.6
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 5.4e-21 105.1 74 68.9
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 5.4e-21 105.1 126 45.2
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 7.1e-21 104.8 97 61.9
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 9.3e-21 104.4 92 54.3
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.2e-20 104.0 82 64.6
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.6e-20 103.6 73 68.5
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.1e-20 103.2 132 43.2
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 2.1e-20 103.2 97 53.6
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.1e-20 103.2 94 58.5
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 2.1e-20 103.2 74 66.2
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.7e-20 102.8 95 52.6
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 3.5e-20 102.4 115 47.0
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 3.5e-20 102.4 94 53.2
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 4.6e-20 102.1 99 54.5
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 6.0e-20 101.7 94 53.2
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.0e-19 100.9 108 46.3
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 1.3e-19 100.5 94 58.5
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-19 100.5 94 58.5
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-19 100.5 94 58.5
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-19 100.5 94 58.5
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.3e-19 100.5 100 55.0
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.7e-19 100.1 86 58.1
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.7e-19 100.1 78 61.5
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.3e-19 99.8 108 48.1
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 3.0e-19 99.4 74 64.9
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 3.0e-19 99.4 109 47.7
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 3.0e-19 99.4 84 57.1
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 3.9e-19 99.0 78 61.5
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 5.1e-19 98.6 99 51.5
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 6.6e-19 98.2 77 62.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 6.6e-19 98.2 75 65.3
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 6.6e-19 98.2 72 63.9
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 8.7e-19 97.8 95 50.5
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.1e-18 97.4 84 58.3
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.1e-18 97.4 71 66.2
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.1e-18 97.4 94 56.4
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.1e-18 97.4 73 60.3
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-18 97.1 94 57.4
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.9e-18 96.7 95 48.4
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.9e-18 96.7 130 43.1
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.9e-18 96.7 130 43.1
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.9e-18 96.7 74 62.2
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.9e-18 96.7 78 61.5
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-18 96.7 96 54.2
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 2.5e-18 96.3 85 56.5
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 2.5e-18 96.3 110 49.1
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 3.3e-18 95.9 73 63.0
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 4.3e-18 95.5 69 66.7
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 4.3e-18 95.5 69 66.7
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 4.3e-18 95.5 99 50.5
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 5.6e-18 95.1 70 62.9
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 5.6e-18 95.1 132 45.5
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 5.6e-18 95.1 69 65.2
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.3e-17 94.0 74 59.5
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 1.3e-17 94.0 96 52.1
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.6e-17 93.6 74 59.5
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.6e-17 93.6 74 59.5
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 2.1e-17 93.2 85 56.5
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 2.8e-17 92.8 70 64.3
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 2.8e-17 92.8 70 64.3
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 2.8e-17 92.8 70 64.3
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 2.8e-17 92.8 74 60.8
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 2.8e-17 92.8 98 45.9
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 2.8e-17 92.8 95 50.5
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 2.8e-17 92.8 74 62.2
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.8e-17 92.0 70 65.7
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 6.2e-17 91.7 102 47.1
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 8.1e-17 91.3 107 46.7
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 1.8e-16 90.1 117 42.7
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.8e-16 90.1 92 50.0
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 3.1e-16 89.4 75 56.0
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 3.1e-16 89.4 74 59.5
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 6.9e-16 88.2 71 63.4
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.0e-16 87.8 122 46.7
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.2e-15 87.4 73 57.5
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 1.5e-15 87.0 93 47.3
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 3.4e-15 85.9 70 57.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 7.6e-15 84.7 112 42.9
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 7.6e-15 84.7 74 56.8
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.3e-14 84.0 67 61.2
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.7e-14 83.6 70 58.6
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 2.9e-14 82.8 60 68.3
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 4.9e-14 82.0 135 39.3
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 4.9e-14 82.0 71 54.9
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.1e-13 80.9 58 67.2
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.9e-13 80.1 77 50.6
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.9e-13 80.1 119 39.5
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 2.4e-13 79.7 78 46.2
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 3.2e-13 79.3 71 52.1
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 3.2e-13 79.3 99 43.4
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 3.2e-13 79.3 71 54.9
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 4.2e-13 79.0 77 50.6
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 1.2e-12 77.4 98 42.9
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.1e-12 76.6 103 44.7
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.0e-12 75.1 88 50.0
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 1.8e-11 73.6 59 59.3
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 2.3e-11 73.2 77 48.1
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 3.3e-10 69.3 70 52.9
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 3.3e-10 69.3 60 53.3
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-08 62.8 101 36.6
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 3.1e-08 62.8 76 38.2
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 1.2e-07 60.8 88 34.1
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 9.9e-07 57.8 93 36.6


User provided reference genes

Program Settings