Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 2.2e-51 205.3 101 100.0
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.5e-42 175.3 101 89.1
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 3.5e-33 144.8 103 73.8
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.3e-32 142.1 102 72.5
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.2e-28 129.8 102 67.6
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.7e-27 125.9 99 63.6
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.1e-26 123.2 100 64.0
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.2e-25 119.8 102 60.8
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 2.1e-25 119.0 100 62.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.7e-25 118.6 104 58.7
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 4.6e-25 117.9 103 57.3
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 4.6e-25 117.9 102 58.8
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 1.0e-24 116.7 104 59.6
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 1.0e-24 116.7 94 66.0
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.8e-24 115.9 104 61.5
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.8e-24 115.9 103 60.2
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.1e-23 113.2 99 65.7
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 1.1e-23 113.2 102 61.8
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.5e-23 112.8 101 62.4
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.5e-23 112.8 103 60.2
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.5e-23 112.8 102 57.8
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 2.0e-23 112.5 102 59.8
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 2.0e-23 112.5 102 55.9
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 2.5e-23 112.1 95 60.0
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.3e-23 111.7 93 61.3
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 4.3e-23 111.3 102 59.8
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 4.3e-23 111.3 98 61.2
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 5.7e-23 110.9 102 56.9
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 5.7e-23 110.9 100 61.0
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 7.4e-23 110.5 102 62.7
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 7.4e-23 110.5 97 61.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 9.7e-23 110.2 105 61.9
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 9.7e-23 110.2 102 57.8
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 9.7e-23 110.2 102 54.9
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 9.7e-23 110.2 102 59.8
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.7e-22 109.4 102 57.8
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 3.7e-22 108.2 102 57.8
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 3.7e-22 108.2 102 54.9
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.7e-22 108.2 95 60.0
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 4.8e-22 107.8 102 55.9
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 6.3e-22 107.5 102 58.8
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 6.3e-22 107.5 102 57.8
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 8.2e-22 107.1 100 59.0
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.1e-21 106.7 102 59.8
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.1e-21 106.7 100 58.0
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 1.1e-21 106.7 100 58.0
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 4.1e-21 104.8 85 63.5
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 9.1e-21 103.6 104 51.0
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 2.0e-20 102.4 96 60.4
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.0e-20 102.4 96 60.4
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.0e-20 102.4 96 60.4
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.0e-20 102.4 96 60.4
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 2.0e-20 102.4 98 57.1
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 3.4e-20 101.7 92 56.5
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.4e-20 101.7 103 57.3
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 3.4e-20 101.7 103 55.3
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 4.5e-20 101.3 106 50.9
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 5.9e-20 100.9 95 56.8
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 7.7e-20 100.5 98 55.1
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.0e-19 100.1 102 55.9
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.0e-19 100.1 103 53.4
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 1.7e-19 99.4 102 51.0
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 2.9e-19 98.6 109 55.0
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 5.0e-19 97.8 96 52.1
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.5e-19 97.4 101 52.5
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 6.5e-19 97.4 98 53.1
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.4e-18 96.3 95 51.6
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.4e-18 96.3 99 53.5
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 2.5e-18 95.5 94 52.1
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 4.2e-18 94.7 99 52.5
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 5.5e-18 94.4 99 50.5
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 5.5e-18 94.4 99 52.5
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 5.5e-18 94.4 95 52.6
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 9.4e-18 93.6 103 44.7
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 9.4e-18 93.6 104 49.0
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.2e-17 93.2 103 50.5
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.1e-17 92.4 95 51.6
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 3.6e-17 91.7 99 50.5
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.7e-17 91.3 96 52.1
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 4.7e-17 91.3 103 50.5
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 6.1e-17 90.9 101 51.5
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 6.1e-17 90.9 103 46.6
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 3.9e-16 88.2 103 45.6
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 5.1e-16 87.8 90 53.3
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 6.7e-16 87.4 94 54.3
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.5e-15 86.3 108 46.3
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 1.5e-15 86.3 102 52.0
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 1.5e-15 86.3 97 49.5
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 2.6e-15 85.5 91 49.5
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 7.4e-15 84.0 97 45.4
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 9.7e-15 83.6 91 54.9
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 9.7e-15 83.6 103 45.6
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.7e-14 82.8 95 49.5
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.7e-14 82.8 91 50.5
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.7e-14 82.8 88 47.7
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 2.2e-14 82.4 91 49.5
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 2.8e-14 82.0 102 49.0
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 2.8e-14 82.0 91 48.4
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 2.8e-14 82.0 96 46.9
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.8e-14 82.0 101 44.6
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 3.7e-14 81.6 87 51.7
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 6.3e-14 80.9 103 46.6
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 6.3e-14 80.9 108 47.2
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 8.2e-14 80.5 98 49.0
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.4e-13 79.7 99 48.5
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.8e-13 79.3 107 44.9
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.4e-13 79.0 93 45.2
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.4e-13 79.0 93 45.2
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 5.3e-13 77.8 97 43.3
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 7.0e-13 77.4 91 46.2
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 9.1e-13 77.0 91 46.2
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 9.1e-13 77.0 91 47.3
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.2e-12 76.6 103 45.6
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.6e-12 76.3 92 48.9
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 2.0e-12 75.9 68 55.9
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 4.5e-12 74.7 91 47.3
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 5.9e-12 74.3 101 45.5
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 5.9e-12 74.3 101 45.5
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 5.0e-11 71.2 92 45.7
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 5.5e-10 67.8 87 39.1
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.2e-09 66.6 81 45.7
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.1e-09 65.9 108 40.7
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.6e-09 65.1 76 42.1
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 4.7e-09 64.7 77 45.5
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.0e-08 63.5 77 44.2
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.8e-08 62.8 82 45.1
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 2.3e-08 62.4 92 39.1
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 5.2e-08 61.2 77 40.3
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 8.8e-08 60.5 82 43.9
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.5e-07 59.7 91 39.6
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.5e-07 59.7 91 39.6
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.5e-07 59.7 91 39.6
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.5e-07 59.7 91 39.6
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 5.7e-07 57.8 91 38.5
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 7.5e-07 57.4 60 51.7
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.3e-06 56.6 101 39.6


User provided reference genes

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