Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 2.5e-292 1008.1 513 100.0
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 2.2e-216 755.7 502 82.1
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 4.5e-193 678.3 481 78.0
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 1.3e-192 676.8 502 74.9
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 8.0e-190 667.5 502 73.9
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 6.8e-189 664.5 504 73.0
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 5.6e-183 644.8 504 68.8
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 6.1e-182 641.3 503 70.0
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 1.0e-181 640.6 504 70.6
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.2e-181 638.3 505 70.3
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.8e-181 637.9 505 70.1
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 6.8e-181 637.9 504 69.2
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 6.8e-181 637.9 504 70.4
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 8.9e-181 637.5 504 69.6
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.5e-180 636.7 503 69.4
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.0e-180 636.3 397 83.9
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 5.7e-180 634.8 503 69.2
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 3.7e-179 632.1 507 69.8
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.8e-178 629.8 503 68.2
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.6e-177 626.7 503 68.2
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 7.8e-177 624.4 504 67.7
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.0e-176 624.0 394 81.2
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.0e-176 624.0 394 81.2
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 5.0e-176 621.7 504 67.3
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 5.0e-176 621.7 505 67.5
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.3e-175 618.6 504 67.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 7.3e-175 617.8 504 68.8
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.8e-174 615.9 507 67.5
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.7e-174 615.1 504 68.7
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 4.7e-174 615.1 505 67.9
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 8.0e-174 614.4 503 68.0
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 8.0e-174 614.4 503 67.8
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.0e-173 614.0 504 68.1
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 5.2e-173 611.7 502 66.9
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 6.8e-173 611.3 391 81.8
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 7.5e-172 607.8 504 66.5
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.3e-171 607.1 506 65.8
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 4.9e-171 605.1 505 66.7
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 6.4e-171 604.7 503 67.2
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 9.2e-170 600.9 504 65.9
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.2e-169 600.5 504 67.1
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.6e-169 600.1 504 66.1
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 1.6e-169 600.1 509 65.4
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 2.7e-169 599.4 395 79.5
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 4.6e-169 598.6 503 65.2
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 4.6e-169 598.6 503 66.8
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 4.6e-169 598.6 503 66.0
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 4.6e-169 598.6 388 80.4
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 7.8e-169 597.8 504 65.9
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.0e-168 597.4 387 80.6
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.3e-168 597.0 504 66.5
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.3e-168 596.3 504 65.5
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.1e-167 594.0 505 65.0
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.1e-167 594.0 505 65.5
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.5e-167 593.6 504 65.7
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.5e-167 593.6 504 65.7
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 2.5e-167 592.8 392 78.6
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.8e-166 589.3 503 65.0
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 3.6e-166 589.0 504 64.9
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 4.7e-166 588.6 505 64.2
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 8.1e-166 587.8 504 65.1
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 5.2e-165 585.1 505 64.4
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 6.8e-165 584.7 504 65.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.0e-164 583.2 505 64.2
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 3.4e-164 582.4 505 64.4
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 7.5e-164 581.3 387 77.5
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.4e-162 577.0 508 64.4
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.9e-162 576.6 536 61.9
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.4e-162 576.2 508 64.0
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 3.5e-161 572.4 505 63.6
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 4.6e-161 572.0 505 61.6
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.3e-160 570.5 504 63.9
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 2.3e-160 569.7 504 63.9
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 3.0e-160 569.3 505 63.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 3.9e-160 568.9 508 63.2
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 5.1e-160 568.5 519 61.3
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 8.6e-160 567.8 452 67.9
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.1e-159 567.4 503 61.4
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 6.2e-158 561.6 528 59.3
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.4e-157 560.5 593 56.7
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 4.0e-157 558.9 504 62.3
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.2e-156 557.4 506 60.1
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 4.4e-156 555.4 385 74.0
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 4.4e-156 555.4 386 74.9
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.8e-156 555.1 504 61.9
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 7.6e-156 554.7 505 62.8
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-154 550.4 504 61.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 7.1e-154 548.1 385 73.5
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.5e-153 545.8 504 61.3
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.3e-152 543.1 504 61.1
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 3.0e-152 542.7 366 77.3
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.1e-152 542.0 504 60.5
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 4.3e-151 538.9 383 73.9
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 3.6e-150 535.8 390 71.8
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.1e-149 534.3 383 73.4
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.1e-149 534.3 383 73.4
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.4e-149 533.9 387 72.1
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.4e-149 533.1 383 72.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 2.6e-148 529.6 395 70.9
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.7e-147 526.9 505 60.2
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.9e-147 526.2 386 71.5
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 5.4e-146 521.9 504 58.5
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 5.4e-146 521.9 386 70.7
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.5e-143 513.8 504 58.1
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 5.3e-141 505.4 443 65.2
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 3.8e-139 499.2 501 55.9
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 2.4e-138 496.5 501 57.5
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 7.6e-132 474.9 426 62.2
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 6.4e-131 471.9 540 53.5
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 7.1e-130 468.4 388 65.5
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 5.6e-127 458.8 393 62.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 7.6e-124 448.4 502 54.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.0e-112 411.4 362 61.6
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.3e-112 410.2 464 51.9
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.4e-109 401.0 394 55.1
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 6.1e-105 385.6 330 64.2
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.1e-97 360.5 328 63.7
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 1.9e-90 337.4 387 45.0
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.5e-74 284.6 238 63.0
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.9e-64 248.8 354 42.9
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.5e-63 248.1 388 39.9
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.4e-56 224.9 242 54.5
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 3.2e-53 213.8 189 66.1
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.1e-48 198.7 163 66.9
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 6.8e-48 196.1 444 30.4
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.1e-44 184.5 123 80.5
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.0e-43 180.6 434 33.4
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-42 177.2 123 74.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.3e-42 176.0 134 67.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 5.6e-34 149.8 121 71.1
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.0e-32 143.7 146 47.3
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.5e-31 141.7 435 29.0
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 9.3e-29 132.5 219 41.6
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.7e-27 128.3 91 73.6
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 5.4e-21 106.7 68 80.9
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 9.6e-18 95.9 107 52.3
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.6e-17 95.1 55 89.1
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.8e-16 91.7 59 79.7
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 7.9e-12 76.3 47 80.9
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.3e-11 75.5 60 63.3
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.9e-10 71.6 67 53.7
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 3.3e-10 70.9 49 83.7
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 7.4e-10 69.7 61 59.0
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 2.1e-09 68.2 62 58.1
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 4.8e-09 67.0 411 21.7
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.8e-08 65.1 97 45.4
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 5.3e-08 63.5 55 63.6
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 7.6e-07 59.7 153 26.8
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 2.9e-06 57.8 412 21.1
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 6.5e-06 56.6 97 43.3


User provided reference genes

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