Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 2.4e-233 812.0 460 100.0
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 6.9e-217 757.3 502 82.1
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 5.5e-206 721.1 440 95.0
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 5.5e-206 721.1 461 91.3
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 4.8e-202 708.0 460 89.8
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.1e-201 704.9 462 88.3
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.2e-194 682.6 462 85.9
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 7.7e-192 674.1 462 84.4
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 6.5e-191 671.0 462 84.6
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.9e-190 669.5 461 83.5
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.5e-190 669.1 462 83.3
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.2e-190 668.7 462 84.4
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.2e-190 668.3 462 84.2
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 6.1e-189 664.5 462 83.8
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 3.3e-187 658.7 462 80.3
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 3.1e-185 652.1 459 80.6
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 6.9e-185 651.0 459 82.6
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.2e-184 650.2 462 80.7
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.5e-184 649.8 461 81.3
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.5e-184 649.8 458 79.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.6e-184 649.0 460 83.0
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 2.6e-184 649.0 460 83.3
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 7.7e-184 647.5 463 82.1
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.0e-183 647.1 464 81.5
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.7e-183 646.4 460 82.8
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 5.0e-183 644.8 459 82.4
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 5.0e-183 644.8 459 81.0
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.4e-182 643.3 459 79.1
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 5.5e-182 641.3 464 75.0
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.2e-181 640.2 462 80.5
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.1e-181 639.4 460 79.1
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 4.7e-181 638.3 459 79.5
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 7.9e-181 637.5 459 81.7
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.8e-180 636.3 462 81.2
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.8e-180 636.3 465 80.9
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.8e-180 636.3 462 79.9
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.8e-180 636.3 458 79.9
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-180 636.0 458 73.1
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-180 636.0 458 73.1
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 6.7e-180 634.4 459 81.3
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 6.7e-180 634.4 463 80.1
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.1e-179 633.6 462 80.3
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.5e-179 633.3 460 80.7
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 2.6e-179 632.5 463 78.2
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.6e-179 632.5 459 80.8
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 5.7e-179 631.3 461 78.5
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 7.4e-179 630.9 462 78.8
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 2.2e-178 629.4 462 79.7
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.7e-178 628.6 462 78.6
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 3.7e-178 628.6 462 79.0
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 6.3e-178 627.9 466 77.9
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.1e-177 627.1 462 78.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 1.8e-177 626.3 462 80.1
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 4.1e-177 625.2 460 80.2
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 4.1e-177 625.2 454 80.2
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 7.0e-177 624.4 462 79.2
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.6e-176 622.5 462 79.0
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 4.5e-176 621.7 462 78.1
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.5e-176 621.7 462 79.2
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.0e-175 620.5 462 79.4
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.3e-175 620.2 460 78.7
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-175 620.2 461 77.7
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.2e-175 619.4 464 79.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 3.8e-175 618.6 464 79.1
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.5e-174 615.9 462 79.2
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 3.2e-174 615.5 462 77.1
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 9.4e-174 614.0 462 77.9
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 9.7e-171 604.0 459 77.3
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.7e-170 603.2 462 76.8
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 2.2e-170 602.8 460 78.0
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.7e-170 602.1 460 78.0
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 5.3e-169 598.2 459 76.9
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 7.0e-169 597.8 476 74.2
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 2.7e-168 595.9 459 74.5
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.7e-168 595.9 493 72.6
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.9e-168 594.7 551 67.5
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.9e-167 592.4 483 72.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 5.0e-167 591.7 462 72.9
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.7e-165 585.9 462 76.4
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 7.5e-163 577.8 462 74.5
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 9.8e-163 577.4 462 73.6
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.7e-162 575.5 462 74.5
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.4e-161 573.5 462 73.2
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.0e-160 569.7 462 73.8
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.5e-160 568.5 462 72.9
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 7.7e-160 567.8 455 74.7
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 1.0e-159 567.4 463 72.6
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.2e-159 566.2 460 73.0
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.9e-158 563.1 465 66.9
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.9e-158 563.1 455 74.3
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.9e-158 563.1 455 74.3
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 4.2e-158 562.0 455 73.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.6e-157 560.1 465 72.3
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.8e-156 556.6 462 66.7
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 2.3e-156 556.2 461 72.0
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 5.2e-156 555.1 386 73.8
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 5.2e-156 555.1 387 74.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 8.3e-154 547.7 386 73.3
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.8e-151 538.9 401 81.0
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.9e-150 536.6 461 69.6
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.2e-149 533.9 388 71.9
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 6.1e-149 531.6 463 62.2
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.5e-147 526.9 459 69.7
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 3.4e-147 525.8 389 71.5
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 2.4e-145 519.6 458 69.7
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 1.6e-144 516.9 458 67.2
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.0e-140 504.2 496 65.7
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 3.1e-140 502.7 383 77.5
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.4e-137 493.0 462 61.3
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 2.0e-136 490.0 462 66.5
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.1e-134 484.2 461 67.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 7.3e-134 481.5 462 64.7
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 8.9e-116 421.4 462 58.0
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.2e-112 411.0 363 61.4
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.6e-112 409.1 475 54.7
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.5e-104 382.9 299 68.2
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.5e-99 365.9 461 50.3
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 6.7e-95 352.1 318 64.5
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 8.2e-77 292.0 289 67.5
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.7e-64 250.4 459 43.1
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.3e-63 247.3 407 39.6
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.2e-56 224.9 242 54.5
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 2.8e-53 213.8 189 66.1
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 9.4e-49 198.7 163 66.9
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 8.0e-48 195.7 505 38.8
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.4e-44 184.9 395 31.1
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.8e-44 184.5 123 80.5
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.9e-42 177.2 123 74.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 8.6e-42 175.6 134 67.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.5e-38 164.9 508 33.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 5.0e-34 149.8 121 71.1
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.1e-32 142.9 156 56.4
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.3e-29 135.2 219 41.6
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 4.6e-27 126.7 90 73.3
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 4.9e-21 106.7 68 80.9
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.9e-20 104.8 101 89.1
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 8.6e-18 95.9 107 52.3
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.5e-17 95.1 55 89.1
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 7.1e-12 76.3 47 80.9
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.2e-11 75.5 60 63.3
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.7e-10 71.6 67 53.7
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 3.0e-10 70.9 49 83.7
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 6.6e-10 69.7 61 59.0
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.9e-09 68.2 62 58.1
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 5.6e-09 66.6 412 21.6
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.6e-08 65.1 97 45.4
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 4.7e-08 63.5 55 63.6
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 5.8e-06 56.6 97 43.3
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 9.9e-06 55.8 411 20.9
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 9.9e-06 55.8 46 65.2


User provided reference genes

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