Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.5e-112 409.5 202 100.0
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 2.2e-90 335.9 201 82.6
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 3.1e-89 332.0 201 82.6
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 5.9e-88 327.8 201 81.1
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.1e-81 307.0 195 75.9
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.8e-81 306.2 197 75.6
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 1.3e-79 300.1 184 81.0
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 3.8e-79 298.5 183 80.3
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 3.8e-79 298.5 191 76.4
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 5.0e-79 298.1 183 80.9
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.5e-78 296.6 190 76.3
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 2.5e-78 295.8 192 78.6
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 3.3e-78 295.4 191 75.4
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 9.5e-78 293.9 195 74.9
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.2e-77 293.5 199 73.9
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.1e-77 292.7 182 75.8
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 8.9e-76 287.3 193 76.2
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.9e-76 287.3 183 77.0
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 1.5e-75 286.6 182 77.5
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.4e-75 285.0 183 76.5
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 5.7e-75 284.6 184 73.9
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 7.5e-75 284.3 193 76.2
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.8e-74 282.3 186 75.8
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 6.3e-74 281.2 185 73.5
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 8.3e-74 280.8 183 73.2
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 1.4e-73 280.0 183 76.5
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 1.4e-73 280.0 183 76.5
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 1.8e-73 279.6 191 72.3
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 4.1e-73 278.5 183 75.4
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 7.0e-73 277.7 202 69.8
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 7.0e-73 277.7 183 72.7
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.2e-72 276.9 197 72.1
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.7e-72 275.8 182 75.3
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.7e-72 275.8 182 75.3
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 5.9e-72 274.6 180 71.1
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 7.8e-72 274.2 190 71.6
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 3.9e-71 271.9 177 72.3
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 5.0e-71 271.6 197 68.0
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 8.6e-71 270.8 186 74.2
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.1e-70 270.4 182 75.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 1.1e-70 270.4 183 71.6
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.5e-70 270.0 182 71.4
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.5e-70 270.0 187 70.6
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 1.9e-70 269.6 182 73.1
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.9e-70 269.6 193 72.0
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.5e-70 269.2 183 70.5
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.5e-70 269.2 182 74.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 4.3e-70 268.5 190 72.6
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 5.6e-70 268.1 182 70.9
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 7.3e-70 267.7 180 71.1
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 2.1e-69 266.2 200 66.0
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.1e-69 266.2 182 70.3
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 2.1e-69 266.2 186 69.9
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 2.8e-69 265.8 187 69.0
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 8.0e-69 264.2 183 72.7
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.0e-68 263.8 187 68.4
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.4e-68 263.5 182 72.0
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.8e-68 263.1 182 69.2
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.8e-68 263.1 179 72.1
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.8e-68 263.1 182 70.3
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.8e-68 263.1 182 70.3
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.8e-68 263.1 185 69.7
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.3e-68 262.7 187 69.0
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 2.3e-68 262.7 187 70.1
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 3.1e-68 262.3 186 67.7
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 3.1e-68 262.3 179 70.4
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.1e-68 262.3 192 70.8
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 4.0e-68 261.9 195 67.2
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 4.0e-68 261.9 180 73.3
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 5.2e-68 261.5 186 68.8
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 6.8e-68 261.2 185 69.2
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 8.9e-68 260.8 179 71.5
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.2e-67 260.4 192 70.3
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.5e-67 260.0 186 69.9
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.0e-67 259.6 184 70.1
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.6e-67 259.2 179 71.5
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 2.6e-67 259.2 187 68.4
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 4.4e-67 258.5 182 68.7
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 7.5e-67 257.7 179 70.4
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 9.8e-67 257.3 186 68.3
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 3.7e-66 255.4 179 72.6
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.4e-65 253.4 184 69.6
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.9e-65 253.1 182 67.6
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.9e-65 253.1 180 70.6
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.4e-65 252.7 160 73.8
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.4e-65 252.7 181 69.1
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 3.2e-65 252.3 187 65.2
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 3.2e-65 252.3 179 69.3
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 4.1e-65 251.9 182 66.5
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 4.1e-65 251.9 182 66.5
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 4.1e-65 251.9 182 66.5
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 5.4e-65 251.5 182 66.5
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 9.2e-65 250.8 156 74.4
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.0e-63 247.3 180 69.4
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.5e-62 243.4 177 71.2
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 4.3e-62 241.9 185 63.8
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 5.6e-62 241.5 184 66.3
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.6e-61 238.8 177 69.5
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 2.3e-60 236.1 179 65.4
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 8.9e-60 234.2 179 64.8
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.7e-58 229.9 158 72.2
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 7.8e-56 221.1 182 61.5
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 1.9e-54 216.5 155 69.0
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 8.1e-53 211.1 191 55.5
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.3e-52 209.5 122 80.3
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 5.8e-51 204.9 178 58.4
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 2.2e-50 203.0 150 66.0
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 4.9e-50 201.8 132 75.8
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 8.3e-50 201.1 184 57.1
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 2.4e-49 199.5 186 58.6
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.1e-49 198.0 123 79.7
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 9.2e-49 197.6 122 79.5
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.7e-47 193.4 181 57.5
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 1.5e-46 190.3 149 61.7
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 4.0e-44 182.2 176 55.7
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 3.8e-42 175.6 165 55.2
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 4.9e-42 175.3 199 51.3
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 8.4e-42 174.5 143 59.4
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 2.4e-41 172.9 146 57.5
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 6.0e-40 168.3 121 69.4
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 9.9e-35 151.0 130 52.3
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.9e-33 146.7 91 75.8
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.3e-31 140.6 84 79.8
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 3.0e-31 139.4 182 44.5
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 3.0e-31 139.4 182 44.5
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.1e-29 133.3 152 45.4
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 4.8e-29 132.1 118 54.2
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 6.4e-26 121.7 157 42.7
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.5e-22 110.5 80 68.8
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.9e-22 110.2 183 36.6
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.3e-20 102.1 59 83.1
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-18 97.4 157 36.9
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.3e-18 97.4 157 36.9
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 8.4e-18 94.7 61 70.5
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 3.2e-17 92.8 138 37.0
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.6e-08 63.9 55 56.4


User provided reference genes

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