Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 9.7e-203 709.9 356 100.0
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 5.1e-143 511.5 356 77.0
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 9.1e-84 314.7 375 53.6
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 7.7e-83 311.6 361 50.7
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 2.9e-82 309.7 371 52.0
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.4e-79 300.8 365 51.0
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.4e-79 300.8 344 52.3
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 2.3e-79 300.1 361 51.0
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 3.0e-79 299.7 361 49.9
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 5.2e-79 298.9 355 50.4
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 2.6e-78 296.6 348 51.4
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 1.7e-77 293.9 369 49.6
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 4.5e-75 285.8 374 46.5
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 5.0e-74 282.3 285 55.8
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 6.6e-74 282.0 360 48.1
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 9.5e-73 278.1 354 47.2
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 1.2e-72 277.7 357 49.6
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 1.4e-71 274.2 308 51.0
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 5.2e-71 272.3 356 47.2
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 1.2e-70 271.2 277 55.6
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 3.4e-70 269.6 342 50.6
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 3.4e-70 269.6 363 46.0
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 4.4e-70 269.2 351 46.4
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 9.8e-70 268.1 351 46.4
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.3e-69 267.7 342 50.3
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 1.3e-69 267.7 342 50.3
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 4.9e-69 265.8 302 52.3
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 6.4e-69 265.4 354 47.5
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.1e-68 264.6 357 45.7
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 1.1e-68 264.6 355 47.9
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.8e-68 263.8 365 45.2
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 4.1e-68 262.7 276 51.4
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 7.0e-68 261.9 347 46.4
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 7.0e-68 261.9 353 46.7
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 9.2e-68 261.5 275 53.5
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 2.0e-67 260.4 357 45.1
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 2.7e-67 260.0 237 61.6
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 2.7e-67 260.0 350 47.4
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 3.5e-67 259.6 354 46.0
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 3.5e-67 259.6 249 57.0
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 4.6e-67 259.2 360 45.6
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.9e-67 258.8 290 52.1
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.0e-66 258.1 290 52.1
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 2.3e-66 256.9 290 51.7
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.0e-66 256.5 290 52.1
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 8.6e-66 255.0 354 45.5
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.1e-65 254.6 361 45.4
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 1.1e-65 254.6 354 45.8
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 2.5e-65 253.4 283 52.3
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 2.5e-65 253.4 343 47.5
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 5.6e-65 252.3 285 52.3
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 7.3e-65 251.9 291 48.1
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 1.2e-64 251.1 330 45.5
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 1.2e-64 251.1 337 46.9
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 1.2e-64 251.1 323 48.0
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 1.6e-64 250.8 296 49.7
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 1.6e-64 250.8 349 45.6
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 2.8e-64 250.0 348 45.4
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 2.8e-64 250.0 285 51.9
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 2.8e-64 250.0 299 46.2
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 1.0e-63 248.1 284 50.0
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 1.4e-63 247.7 343 44.6
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 6.8e-63 245.4 292 50.7
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 2.6e-62 243.4 344 46.8
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 4.4e-62 242.7 356 43.5
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 5.8e-62 242.3 344 45.3
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 9.8e-62 241.5 360 44.2
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 2.2e-61 240.4 347 43.8
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 2.2e-61 240.4 396 41.7
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 3.7e-61 239.6 332 44.6
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 3.7e-61 239.6 296 47.6
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 4.9e-61 239.2 350 45.7
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 1.9e-60 237.3 316 46.2
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 5.4e-60 235.7 316 45.9
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 7.0e-60 235.3 316 45.9
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 7.0e-60 235.3 345 44.6
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 2.0e-59 233.8 316 45.3
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 4.6e-59 232.6 316 45.3
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 7.8e-59 231.9 255 50.6
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 2.3e-58 230.3 451 37.5
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 3.0e-58 229.9 329 43.8
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 4.3e-57 226.1 270 46.7
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 5.6e-57 225.7 313 45.0
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 5.6e-57 225.7 333 44.4
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.8e-56 223.4 343 42.6
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 6.2e-56 222.2 363 43.3
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.5e-54 217.6 251 49.8
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 4.4e-54 216.1 279 47.0
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.3e-53 214.5 278 46.8
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.4e-52 210.3 265 47.2
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 4.1e-52 209.5 358 42.5
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 1.4e-47 194.5 202 54.0
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 2.6e-46 190.3 320 39.1
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 2.7e-43 180.3 340 39.7
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 4.3e-41 172.9 262 40.8
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 3.6e-40 169.9 263 39.9
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 4.7e-40 169.5 268 39.6
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 5.8e-38 162.5 246 38.2
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 9.9e-38 161.8 333 36.9
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 9.9e-38 161.8 265 38.9
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 3.5e-35 153.3 234 38.0
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 8.1e-32 142.1 151 55.6
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.1e-27 127.5 114 57.0
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 8.7e-26 122.1 169 46.7
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 1.1e-25 121.7 230 40.4
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 5.6e-25 119.4 166 42.8
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 1.3e-24 118.2 176 45.5
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.3e-21 108.2 229 31.0
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 3.0e-18 97.1 145 42.8
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 1.8e-15 87.8 235 30.2
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 4.9e-13 79.7 147 40.8
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 8.4e-13 79.0 91 48.4
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 2.1e-11 74.3 209 29.2
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 1.9e-09 67.8 121 42.1
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 4.5e-06 56.6 92 33.7


User provided reference genes

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