Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 2.0e-27 126.3 153 100.0
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 8.3e-26 120.9 64 96.9
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 1.6e-24 116.7 64 93.8
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 4.3e-22 108.6 64 85.9
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 6.2e-21 104.8 64 81.2
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 2.0e-19 99.8 64 82.8
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 2.9e-18 95.9 64 78.1
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 8.3e-18 94.4 64 78.1
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 1.4e-17 93.6 64 75.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 1.9e-17 93.2 64 75.0
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 3.2e-17 92.4 73 67.1
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 3.2e-17 92.4 64 76.6
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 5.4e-17 91.7 64 73.4
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 5.4e-17 91.7 64 73.4
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 9.2e-17 90.9 65 76.9
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 9.2e-17 90.9 65 75.4
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.2e-16 90.5 65 73.8
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 1.6e-16 90.1 56 78.6
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 2.7e-16 89.4 61 77.0
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 2.7e-16 89.4 64 73.4
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.7e-16 89.4 65 73.8
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.5e-16 89.0 65 73.8
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 6.0e-16 88.2 65 72.3
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 7.8e-16 87.8 64 70.3
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 7.8e-16 87.8 53 81.1
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 7.8e-16 87.8 65 72.3
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 7.8e-16 87.8 64 75.0
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 7.8e-16 87.8 62 74.2
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.3e-15 87.0 64 71.9
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 1.3e-15 87.0 65 72.3
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 3.9e-15 85.5 62 72.6
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 3.9e-15 85.5 64 65.6
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 5.1e-15 85.1 64 71.9
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 5.1e-15 85.1 64 71.9
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 6.6e-15 84.7 61 72.1
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.1e-14 84.0 64 71.9
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.9e-14 83.2 65 67.7
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 1.9e-14 83.2 61 70.5
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 2.5e-14 82.8 61 72.1
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 3.3e-14 82.4 64 67.2
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 7.3e-14 81.3 61 73.8
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 7.3e-14 81.3 61 73.8
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 7.3e-14 81.3 59 76.3
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 9.5e-14 80.9 64 68.8
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 9.5e-14 80.9 64 70.3
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 9.5e-14 80.9 65 66.2
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 1.2e-13 80.5 64 67.2
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 1.6e-13 80.1 64 70.3
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 1.6e-13 80.1 55 70.9
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 1.6e-13 80.1 65 66.2
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 2.1e-13 79.7 64 64.1
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 2.1e-13 79.7 65 64.6
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 2.8e-13 79.3 62 62.9
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 8.1e-13 77.8 61 70.5
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 8.1e-13 77.8 64 64.1
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.1e-12 77.4 61 68.9
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 1.1e-12 77.4 67 61.2
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 1.1e-12 77.4 51 76.5
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 1.4e-12 77.0 64 62.5
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 1.8e-12 76.6 64 62.5
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 2.3e-12 76.3 59 66.1
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 8.9e-12 74.3 55 76.4
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 8.9e-12 74.3 64 59.4
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.2e-11 73.9 60 68.3
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.2e-11 73.9 65 63.1
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 1.5e-11 73.6 64 60.9
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 2.0e-11 73.2 64 62.5
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 2.6e-11 72.8 47 76.6
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 3.4e-11 72.4 65 63.1
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 5.8e-11 71.6 65 61.5
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 5.8e-11 71.6 52 67.3
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.8e-11 71.6 52 67.3
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.8e-11 71.6 52 67.3
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.8e-11 71.6 52 67.3
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 5.8e-11 71.6 61 67.2
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 1.3e-10 70.5 47 76.6
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.3e-10 70.5 65 61.5
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.7e-10 70.1 52 71.2
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 1.7e-10 70.1 64 56.2
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 1.7e-10 70.1 52 71.2
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 1.7e-10 70.1 55 70.9
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 2.2e-10 69.7 52 69.2
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.2e-10 69.7 65 60.0
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 6.4e-10 68.2 50 66.0
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 1.1e-09 67.4 65 63.1
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 1.1e-09 67.4 56 67.9
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 1.4e-09 67.0 52 65.4
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.4e-09 66.2 57 64.9
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 4.1e-09 65.5 52 65.4
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 4.1e-09 65.5 52 65.4
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 4.1e-09 65.5 52 65.4
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 4.1e-09 65.5 52 65.4
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 5.4e-09 65.1 58 60.3
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 1.2e-08 63.9 52 63.5
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.6e-08 63.5 51 68.6
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 2.7e-08 62.8 46 71.7
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 6.0e-08 61.6 80 47.5
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 3.0e-07 59.3 58 51.7
Lj1A285T18 Lonicera japonica HOM05D007144 ORTHO05D008709 9.6e-06 54.3 37 78.4


User provided reference genes

Program Settings