Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23213 Corylus avellana HOM05D002829 ORTHO05D003124 2.4e-40 168.3 82 100.0
Cfa009847 Carpinus fangiana HOM05D002829 ORTHO05D003124 1.9e-37 158.7 82 95.1
Thecc.09G249600 Theobroma cacao HOM05D002829 ORTHO05D003124 4.6e-31 137.5 81 79.0
Duzib168G0270 Durio zibethinus HOM05D002829 ORTHO05D003124 1.0e-30 136.3 81 75.3
Potri.001G276400 Populus trichocarpa HOM05D002829 ORTHO05D003124 3.0e-30 134.8 82 76.8
Duzib150G0976 Durio zibethinus HOM05D002829 ORTHO05D003124 1.1e-29 132.9 81 76.5
Duzib265G0001 Durio zibethinus HOM05D002829 ORTHO05D003124 1.1e-29 132.9 81 76.5
GSVIVG01037265001 Vitis vinifera HOM05D002829 ORTHO05D003124 1.1e-29 132.9 81 75.3
Sabra09G0053800 Salix brachista HOM05D002829 ORTHO05D003124 3.3e-29 131.3 82 74.4
Prupe.4G267600 Prunus persica HOM05D002829 ORTHO05D003124 4.3e-29 131.0 83 73.5
Potri.009G071100 Populus trichocarpa HOM05D002829 ORTHO05D003124 9.6e-29 129.8 82 74.4
QL01p017384 Quercus lobata HOM05D002829 ORTHO05D003124 9.6e-29 129.8 80 76.2
COL.COLO4_06524 Corchorus olitorius HOM05D002829 ORTHO05D003124 1.3e-28 129.4 81 77.8
Sabra16G0170300 Salix brachista HOM05D002829 ORTHO05D003124 2.1e-28 128.6 82 73.2
Cpa.g.sc482.1 Carica papaya HOM05D002829 ORTHO05D003124 2.8e-28 128.3 83 73.5
Glyma.02G280100 Glycine max HOM05D002829 ORTHO05D003124 4.8e-28 127.5 85 74.1
Glyma.14G034700 Glycine max HOM05D002829 ORTHO05D003124 4.8e-28 127.5 84 72.6
MD11G1186400 Malus domestica HOM05D002829 ORTHO05D003124 2.4e-27 125.2 87 69.0
CANSAT54G2047 Cannabis sativa HOM05D002829 ORTHO05D003124 6.9e-27 123.6 83 69.9
CiPaw.14G113800 Carya illinoinensis HOM05D002829 ORTHO05D003124 6.9e-27 123.6 85 74.1
Gohir.A05G071400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 9.0e-27 123.2 80 71.2
Gohir.D05G074300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 9.0e-27 123.2 80 71.2
SalBow6G1572 Salvia bowleyana HOM05D002829 ORTHO05D003124 1.2e-26 122.9 81 72.8
SalBow6G5405 Salvia bowleyana HOM05D002829 ORTHO05D003124 1.2e-26 122.9 81 72.8
Gohir.A07G120300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.5e-26 122.5 80 72.5
Gohir.D07G124500 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.5e-26 122.5 80 72.5
Gorai.001G134300 Gossypium raimondii HOM05D002829 ORTHO05D003124 1.5e-26 122.5 80 72.5
RcHm_v2.0_Chr5g0050661 Rosa chinensis HOM05D002829 ORTHO05D003124 1.5e-26 122.5 81 74.1
MD03G1167500 Malus domestica HOM05D002829 ORTHO05D003124 2.6e-26 121.7 85 69.4
Manes.02G139900 Manihot esculenta HOM05D002829 ORTHO05D003124 2.6e-26 121.7 83 68.7
CiPaw.13G151500 Carya illinoinensis HOM05D002829 ORTHO05D003124 3.4e-26 121.3 81 76.5
Gorai.009G075400 Gossypium raimondii HOM05D002829 ORTHO05D003124 3.4e-26 121.3 80 70.0
Oeu025903.1 Olea europaea HOM05D002829 ORTHO05D003124 3.4e-26 121.3 81 70.4
Ciclev10017998m.g Citrus clementina HOM05D002829 ORTHO05D003124 4.5e-26 120.9 87 66.7
FAN16G1561 Fragaria x ananassa HOM05D002829 ORTHO05D003124 4.5e-26 120.9 81 72.8
FvH4_3g27940 Fragaria vesca HOM05D002829 ORTHO05D003124 5.8e-26 120.6 81 71.6
FAN11G2404 Fragaria x ananassa HOM05D002829 ORTHO05D003124 5.8e-26 120.6 81 71.6
FAN21G1998 Fragaria x ananassa HOM05D002829 ORTHO05D003124 5.8e-26 120.6 81 72.8
PGR119G1580 Punica granatum HOM05D002829 ORTHO05D003124 7.6e-26 120.2 87 71.3
Lj1P286T7 Lonicera japonica HOM05D002829 ORTHO05D003124 1.7e-25 119.0 83 66.3
Lalb_Chr04g0249191 Lupinus albus HOM05D002829 ORTHO05D003124 2.2e-25 118.6 82 68.3
CSS0010856 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 2.9e-25 118.2 88 64.8
Peaxi162Scf00156g00044 Petunia axillaris HOM05D002829 ORTHO05D003124 3.8e-25 117.9 85 68.2
Atru.chr3.2771 Acer truncatum HOM05D002829 ORTHO05D003124 4.9e-25 117.5 83 65.1
VMungo0540G0048 Vigna mungo HOM05D002829 ORTHO05D003124 4.9e-25 117.5 81 65.4
Glyma.08G301500 Glycine max HOM05D002829 ORTHO05D003124 1.4e-24 115.9 81 66.7
Phvul.006G030200 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 1.9e-24 115.5 81 66.7
Phvul.008G200600 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 1.9e-24 115.5 81 70.4
Sopen04g025670 Solanum pennellii HOM05D002829 ORTHO05D003124 2.4e-24 115.2 84 64.3
Nn7g36674 Nelumbo nucifera HOM05D002829 ORTHO05D003124 4.2e-24 114.4 81 70.4
Solyc04g057830.1 Solanum lycopersicum HOM05D002829 ORTHO05D003124 4.2e-24 114.4 84 64.3
LjContig00049g0000214 Lotus japonicus HOM05D002829 ORTHO05D003124 9.3e-24 113.2 85 68.2
PGSC0003DMG400016928 Solanum tuberosum HOM05D002829 ORTHO05D003124 9.3e-24 113.2 83 61.4
Glyma.08G301600 Glycine max HOM05D002829 ORTHO05D003124 2.1e-23 112.1 81 66.7
Lalb_Chr17g0347961 Lupinus albus HOM05D002829 ORTHO05D003124 2.1e-23 112.1 81 72.8
Peaxi162Scf00741g00031 Petunia axillaris HOM05D002829 ORTHO05D003124 2.7e-23 111.7 86 62.8
TPR.G19349 Trifolium pratense HOM05D002829 ORTHO05D003124 2.7e-23 111.7 81 66.7
Oeu030630.1 Olea europaea HOM05D002829 ORTHO05D003124 3.5e-23 111.3 82 64.6
Medtr5g089820 Medicago truncatula HOM05D002829 ORTHO05D003124 4.6e-23 110.9 81 66.7
Oeu001330.1 Olea europaea HOM05D002829 ORTHO05D003124 1.0e-22 109.8 82 63.4
Peaxi162Scf00994g00001 Petunia axillaris HOM05D002829 ORTHO05D003124 1.0e-22 109.8 86 60.5
arahy.Tifrunner.gnm1.ann1.9SET9D Arachis hypogaea HOM05D002829 ORTHO05D003124 3.0e-22 108.2 84 65.5
arahy.Tifrunner.gnm1.ann1.Z08FR7 Arachis hypogaea HOM05D002829 ORTHO05D003124 3.0e-22 108.2 85 64.7
Psat0s3829g0080 Pisum sativum HOM05D002829 ORTHO05D003124 3.0e-22 108.2 83 65.1
TAR369G0681 Trochodendron aralioides HOM05D002829 ORTHO05D003124 3.9e-22 107.8 81 65.4
TAR623G1065 Trochodendron aralioides HOM05D002829 ORTHO05D003124 3.9e-22 107.8 83 65.1
Lj6g0027879 Lotus japonicus HOM05D002829 ORTHO05D003124 8.7e-22 106.7 86 62.8
CsaV3_1G043320 Cucumis sativus L. HOM05D002829 ORTHO05D003124 1.1e-21 106.3 81 61.7
Cc01_g05450 Coffea canephora HOM05D002829 ORTHO05D003124 1.5e-21 105.9 83 60.2
PGR102G2796 Punica granatum HOM05D002829 ORTHO05D003124 1.9e-21 105.5 85 61.2
Eucgr.J00699 Eucalyptus grandis HOM05D002829 ORTHO05D003124 2.5e-21 105.1 74 66.2
Rhsim13G0210900 Rhododendron simsii HOM05D002829 ORTHO05D003124 3.3e-21 104.8 83 57.8
Eucgr.B03728 Eucalyptus grandis HOM05D002829 ORTHO05D003124 4.3e-21 104.4 86 60.5
Glyma.18G118300 Glycine max HOM05D002829 ORTHO05D003124 4.3e-21 104.4 72 66.7
Sed0001383 Sechium edule HOM05D002829 ORTHO05D003124 4.3e-21 104.4 81 60.5
Eucgr.B03729 Eucalyptus grandis HOM05D002829 ORTHO05D003124 7.4e-21 103.6 85 60.0
ClCG03G012660 Citrullus lanatus HOM05D002829 ORTHO05D003124 9.6e-21 103.2 81 63.0
MELO3C015127.2 Cucumis melo HOM05D002829 ORTHO05D003124 9.6e-21 103.2 81 60.5
Manes.01G179200 Manihot esculenta HOM05D002829 ORTHO05D003124 2.8e-20 101.7 81 58.0
Sc09g0000990 Simmondsia chinensis HOM05D002829 ORTHO05D003124 3.7e-20 101.3 83 60.2
SGA_v2.0_scaffold29G12253 Striga asiatica HOM05D002829 ORTHO05D003124 2.4e-19 98.6 82 58.5
Duzib170G0965 Durio zibethinus HOM05D002829 ORTHO05D003124 4.0e-19 97.8 67 73.1
Ciclev10016678m.g Citrus clementina HOM05D002829 ORTHO05D003124 9.0e-19 96.7 80 62.5
Sed0021871 Sechium edule HOM05D002829 ORTHO05D003124 2.6e-18 95.1 81 56.8
AUR62000184 Chenopodium quinoa HOM05D002829 ORTHO05D003124 3.4e-18 94.7 84 60.7
Nn2g14835 Nelumbo nucifera HOM05D002829 ORTHO05D003124 5.8e-18 94.0 64 70.3
Sed0020414 Sechium edule HOM05D002829 ORTHO05D003124 5.8e-18 94.0 81 56.8
Migut.D00655 Erythranthe guttata HOM05D002829 ORTHO05D003124 7.6e-18 93.6 66 66.7
MBI13_g17977_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 8.4e-17 90.1 77 57.1
HanXRQChr14g0432431 Helianthus annuus HOM05D002829 ORTHO05D003124 1.4e-16 89.4 86 54.7
Sed0010124 Sechium edule HOM05D002829 ORTHO05D003124 2.5e-16 88.6 81 54.3
Actinidia16376 Actinidia chinensis HOM05D002829 ORTHO05D003124 4.2e-16 87.8 65 64.6
PSO339G3894 Papaver somniferum HOM05D002829 ORTHO05D003124 5.5e-16 87.4 83 53.0
PSO384G3239 Papaver somniferum HOM05D002829 ORTHO05D003124 5.5e-16 87.4 83 54.2
Ca_25922_v3 Cicer arietinum L. HOM05D002829 ORTHO05D003124 9.3e-16 86.7 65 69.2
Aqoxy2G00368 Aquilegia oxysepala HOM05D002829 ORTHO05D003124 1.6e-15 85.9 78 59.0
Lsat_1_v5_gn_9_13041 Lactuca sativa HOM05D002829 ORTHO05D003124 2.7e-15 85.1 91 52.7
EL10Ac4g10137 Beta vulgaris HOM05D002829 ORTHO05D003124 3.5e-15 84.7 83 50.6
MBI19_g31856_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 3.5e-15 84.7 75 57.3
Oeu039578.1 Olea europaea HOM05D002829 ORTHO05D003124 6.0e-15 84.0 65 63.1
Psat5g194160 Pisum sativum HOM05D002829 ORTHO05D003124 6.0e-15 84.0 65 64.6
DCAR_002104 Daucus carota HOM05D002829 ORTHO05D003124 7.9e-15 83.6 77 58.4
Medtr3g045790 Medicago truncatula HOM05D002829 ORTHO05D003124 7.9e-15 83.6 66 66.7
Nitab4.5_0000276g0100 Nicotiana tabacum HOM05D002829 ORTHO05D003124 1.0e-14 83.2 65 58.5
Phvul.006G030300 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 1.0e-14 83.2 63 60.3
TPR.G8464 Trifolium pratense HOM05D002829 ORTHO05D003124 1.0e-14 83.2 65 67.7
AT5G12340 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 1.3e-14 82.8 82 46.3
AL6G23140 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 1.8e-14 82.4 82 45.1
BcaNung03623 Brassica carinata HOM05D002829 ORTHO05D003124 2.3e-14 82.0 83 45.8
ECA238G1676 Erigeron canadensis HOM05D002829 ORTHO05D003124 3.0e-14 81.6 95 47.4
Sp6g31300 Schrenkiella parvula HOM05D002829 ORTHO05D003124 3.0e-14 81.6 83 48.2
Carub.0006s1085 Capsella rubella HOM05D002829 ORTHO05D003124 3.9e-14 81.3 82 47.6
A10p25480 Brassica napus HOM05D002829 ORTHO05D003124 5.1e-14 80.9 83 44.6
C09p64560 Brassica napus HOM05D002829 ORTHO05D003124 5.1e-14 80.9 83 44.6
BraA10t44612Z Brassica rapa HOM05D002829 ORTHO05D003124 5.1e-14 80.9 83 44.6
Thhalv10015959m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 6.7e-14 80.5 85 41.2
MBI13_g46995_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 6.7e-14 80.5 76 55.3
C02p05710 Brassica napus HOM05D002829 ORTHO05D003124 1.5e-13 79.3 84 46.4
BolC2t06515H Brassica oleracea HOM05D002829 ORTHO05D003124 1.5e-13 79.3 84 46.4
CDE08G1493 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 2.5e-13 78.6 76 53.9
BcaNung01195 Brassica carinata HOM05D002829 ORTHO05D003124 3.3e-13 78.2 84 46.4
C02p05700 Brassica napus HOM05D002829 ORTHO05D003124 3.3e-13 78.2 84 46.4
BolC2t06514H Brassica oleracea HOM05D002829 ORTHO05D003124 3.3e-13 78.2 84 46.4
BcaNung03622 Brassica carinata HOM05D002829 ORTHO05D003124 7.4e-13 77.0 83 45.8
A02p01480 Brassica napus HOM05D002829 ORTHO05D003124 9.6e-13 76.6 84 44.0
BraA02t05127Z Brassica rapa HOM05D002829 ORTHO05D003124 9.6e-13 76.6 84 44.0
Nitab4.5_0000456g0140 Nicotiana tabacum HOM05D002829 ORTHO05D003124 1.3e-12 76.3 65 56.9
THA.LOC104824621 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 3.7e-12 74.7 83 50.6
ATR0745G071 Amborella trichopoda HOM05D002829 ORTHO05D003124 6.2e-12 73.9 70 54.3
HanXRQChr14g0432451 Helianthus annuus HOM05D002829 ORTHO05D003124 6.2e-12 73.9 83 53.0
Aa31LG3G14890 Aethionema arabicum HOM05D002829 ORTHO05D003124 1.4e-11 72.8 80 40.0
CDE09G1183 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 3.1e-11 71.6 81 48.1
Lsat_1_v5_gn_2_33560 Lactuca sativa HOM05D002829 ORTHO05D003124 3.1e-11 71.6 67 53.7
HPP92_025013 Vanilla planifolia HOM05D002829 ORTHO05D003124 4.0e-11 71.2 79 49.4
BolC9t59289H Brassica oleracea HOM05D002829 ORTHO05D003124 5.3e-11 70.9 73 45.2
EL10Ac4g10150 Beta vulgaris HOM05D002829 ORTHO05D003124 6.9e-11 70.5 66 53.0
Zm00001eb286970 Zea mays HOM05D002829 ORTHO05D003124 4.5e-10 67.8 78 47.4
Os05g0385400 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 1.7e-09 65.9 82 47.6
Zm00001eb347100 Zea mays HOM05D002829 ORTHO05D003124 6.5e-09 63.9 78 46.2
Os01g0952900 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 1.1e-08 63.2 68 45.6
Zm00001eb394490 Zea mays HOM05D002829 ORTHO05D003124 1.9e-08 62.4 66 48.5
QL03p048302 Quercus lobata HOM05D002829 ORTHO05D003124 1.2e-07 59.7 71 43.7
HPP92_006724 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.2e-07 59.7 73 49.3
Os07g0659300 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 1.6e-07 59.3 94 41.5
Sabra03G0116300 Salix brachista HOM05D002829 ORTHO05D003124 3.5e-07 58.2 86 39.5
Os03g0356526 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 7.9e-07 57.0 74 44.6
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 7.9e-07 57.0 67 49.3
Oeu011726.1 Olea europaea HOM05D002829 ORTHO05D003124 1.0e-06 56.6 63 49.2
Zm00001eb140690 Zea mays HOM05D002829 ORTHO05D003124 1.3e-06 56.2 68 44.1
Sabra01G0049600 Salix brachista HOM05D002829 ORTHO05D003124 1.8e-06 55.8 73 45.2
Zm00001eb110740 Zea mays HOM05D002829 ORTHO05D003124 1.8e-06 55.8 98 37.8
CiPaw.05G097800 Carya illinoinensis HOM05D002829 ORTHO05D003124 3.0e-06 55.1 68 44.1
Medtr4g118680 Medicago truncatula HOM05D002829 ORTHO05D003124 3.0e-06 55.1 38 71.1
Cfa009474 Carpinus fangiana HOM05D002829 ORTHO05D003124 3.9e-06 54.7 68 47.1
Oeu010270.1 Olea europaea HOM05D002829 ORTHO05D003124 3.9e-06 54.7 63 46.0
Haze_12531 Corylus avellana HOM05D002829 ORTHO05D003124 5.1e-06 54.3 64 48.4
Potri.003G160000 Populus trichocarpa HOM05D002829 ORTHO05D003124 5.1e-06 54.3 86 38.4
unitig_90.g27450 Utricularia gibba HOM05D002829 ORTHO05D003124 6.7e-06 53.9 40 57.5


User provided reference genes

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