Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 2.4e-234 815.1 402 100.0
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.7e-232 808.9 402 99.3
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.1e-224 780.8 402 94.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 6.6e-224 780.4 402 94.3
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.1e-223 779.6 402 93.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.1e-223 779.6 402 94.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.9e-223 778.9 402 93.5
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 6.2e-222 773.9 402 93.3
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.1e-221 773.1 402 92.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.4e-221 772.7 402 93.5
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 93.0
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 93.0
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 92.0
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 92.5
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 92.3
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 92.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.5e-220 769.2 402 93.8
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.0e-220 768.8 402 92.8
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.0e-220 768.8 402 93.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.6e-220 768.5 401 91.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 5.8e-220 767.3 402 92.0
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 91.8
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.0
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.5
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 91.5
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 91.3
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.9e-219 765.0 402 92.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 6.4e-219 763.8 402 91.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 90.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.5
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.3
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.8
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 91.0
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 91.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 91.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 91.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.3
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.5
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.5
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 89.6
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 89.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.0
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 89.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.3
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 4.3e-215 751.1 416 88.2
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.5
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.3
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.1
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 90.0
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.1e-214 748.8 416 88.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.1
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 90.5
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 90.5
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 88.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 90.0
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.1
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 90.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 3.4e-212 741.5 402 88.1
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.1
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 89.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.1
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 88.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 87.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.6
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 5.5e-210 734.2 411 86.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 86.8
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 88.1
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 87.3
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 87.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 87.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.3e-208 729.6 429 83.7
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.8e-208 729.2 417 85.1
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 86.6
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.8
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 4.3e-207 724.5 438 81.5
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.3
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 85.6
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 85.8
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 85.6
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 86.3
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 2.1e-206 722.2 441 81.4
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 86.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 86.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 86.8
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 86.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 86.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 86.6
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 8.1e-206 720.3 402 84.8
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 86.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.4e-205 718.8 419 85.7
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 86.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 4.0e-205 718.0 396 86.4
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.6
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 4.5e-204 714.5 402 87.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.5e-204 714.5 402 87.1
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 85.1
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 85.1
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 85.1
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.7e-203 712.6 402 85.1
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.2e-203 712.2 400 84.0
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.8e-203 711.4 402 84.3
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 6.5e-203 710.7 401 85.0
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.9e-202 709.1 402 82.3
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 2.5e-199 698.7 402 83.8
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.3e-199 698.4 402 85.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 6.3e-198 694.1 375 88.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 3.9e-192 674.9 402 80.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.5e-191 672.9 357 89.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.2e-190 669.1 361 90.6
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.8e-190 667.9 402 80.1
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 6.3e-190 667.5 402 79.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 6.9e-189 664.1 360 88.1
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 7.4e-183 644.0 402 79.4
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 6.5e-179 630.9 334 91.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.2e-178 628.6 401 73.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.6e-177 626.3 340 89.4
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.0e-175 619.4 402 71.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.4e-175 618.2 402 72.4
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.6e-172 609.0 402 75.6
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 5.9e-172 607.8 402 70.6
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-170 603.2 403 70.2
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.9e-170 602.8 403 70.0
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.0e-163 580.5 401 67.6
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.2e-162 575.5 402 68.7
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.5e-156 555.1 403 65.3
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.1e-153 546.2 289 91.3
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-144 516.9 403 67.5
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 1.4e-141 506.9 419 63.7
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 2.0e-135 486.5 402 63.2
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 6.8e-128 461.5 259 84.6
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 5.6e-122 441.8 394 54.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.3e-115 420.6 395 53.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.5e-114 417.2 295 71.5
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 7.6e-103 378.3 229 81.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 3.8e-102 375.9 219 85.4
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.4e-101 374.0 219 84.5
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 3.2e-101 372.9 219 83.6
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.8e-83 313.9 300 54.0
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.9e-83 312.8 160 91.9
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 9.0e-80 301.6 165 87.3
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 5.0e-54 216.1 116 88.8
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.7e-33 147.9 86 81.4
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.7e-30 137.9 351 28.2
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.5e-29 134.8 352 27.0
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.9e-16 91.3 47 87.2
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 3.0e-14 84.0 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.9e-13 81.3 72 58.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 8.1e-12 75.9 318 23.9
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 6.0e-07 59.7 355 21.4


User provided reference genes

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