Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 3.3e-289 997.7 500 100.0
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 2.5e-212 742.3 455 85.5
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.4e-199 699.9 479 76.2
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 4.1e-191 671.8 448 76.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.5e-188 662.5 448 76.1
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.7e-187 658.3 471 72.4
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.4e-186 656.8 465 73.3
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 5.2e-186 654.8 451 74.9
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 6.8e-186 654.4 448 75.7
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.7e-184 649.8 475 71.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.1e-183 647.1 448 75.0
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.9e-183 646.4 448 75.0
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.7e-182 642.5 448 73.4
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.5e-182 642.1 466 71.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 7.8e-182 641.0 461 71.8
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.3e-181 640.2 470 70.9
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.0e-181 639.0 464 71.1
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.9e-181 638.6 448 73.2
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.1e-180 637.1 448 73.4
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 3.3e-180 635.6 448 73.2
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 7.3e-180 634.4 447 73.6
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.6e-179 633.3 462 71.6
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.6e-179 633.3 447 72.9
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 2.1e-179 632.9 454 74.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.8e-179 632.5 448 72.8
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 4.7e-179 631.7 448 72.3
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.2e-179 631.3 447 72.7
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 4.0e-178 628.6 463 71.3
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 8.9e-178 627.5 448 71.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.0e-177 626.3 443 72.9
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.4e-177 625.5 466 69.5
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 4.4e-177 625.2 457 70.5
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.4e-177 625.2 447 71.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 5.8e-177 624.8 448 71.4
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.8e-177 624.8 448 71.4
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 9.9e-177 624.0 479 67.2
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.3e-176 623.6 461 70.5
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.7e-176 623.2 457 70.7
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 3.8e-176 622.1 444 71.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 6.4e-176 621.3 463 69.5
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 8.4e-176 620.9 449 72.2
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.4e-175 620.2 430 74.4
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.4e-175 620.2 468 69.0
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-175 619.8 449 71.9
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.4e-175 619.4 443 72.2
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.2e-175 619.0 447 71.4
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 9.2e-175 617.5 444 70.7
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.5e-174 615.5 457 69.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.7e-173 613.2 459 69.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.3e-173 612.8 444 71.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.9e-172 609.8 505 64.6
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 5.6e-172 608.2 447 68.7
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 7.3e-172 607.8 454 68.9
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.6e-171 606.7 455 69.2
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 2.8e-171 605.9 445 71.0
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.0e-170 602.1 454 68.5
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 4.0e-170 602.1 445 70.1
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 4.0e-170 602.1 454 68.3
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 4.0e-170 602.1 460 67.4
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 4.0e-170 602.1 449 68.6
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 5.3e-170 601.7 454 68.1
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 6.9e-170 601.3 468 65.6
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 6.9e-170 601.3 454 68.7
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 3.4e-169 599.0 474 65.0
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.3e-168 597.0 492 64.8
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 6.4e-168 594.7 462 66.0
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.4e-168 594.7 448 67.9
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.1e-166 589.7 475 63.8
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 2.1e-166 589.7 448 67.2
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.7e-166 589.3 475 63.6
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.0e-165 585.9 448 66.5
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 5.1e-165 585.1 474 65.8
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 5.1e-165 585.1 430 70.7
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 9.6e-164 580.9 445 66.5
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.1e-162 575.9 611 54.7
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 5.3e-162 575.1 475 63.2
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 5.3e-162 575.1 446 66.4
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 6.9e-162 574.7 475 63.2
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.3e-160 570.5 476 62.0
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.7e-160 570.1 475 62.7
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.7e-160 570.1 475 62.7
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.9e-160 569.3 440 65.9
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.2e-158 563.9 454 63.0
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.1e-156 557.4 448 65.6
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.1e-156 557.4 412 70.4
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.1e-154 549.3 414 68.8
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.5e-153 547.0 463 60.7
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.0e-153 546.6 455 64.6
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 5.8e-153 545.0 403 70.2
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.2e-152 543.1 374 74.3
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.1e-151 540.8 414 67.6
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 2.5e-151 539.7 478 62.8
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 5.5e-151 538.5 447 63.8
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.0e-144 517.7 397 66.2
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.1e-138 497.7 429 59.7
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.4e-138 497.3 391 65.2
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 4.1e-138 495.7 467 55.0
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.0e-137 493.4 412 62.9
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.1e-135 487.6 454 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.4e-135 487.3 455 55.8
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.2e-135 486.1 456 55.5
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.0e-133 481.1 354 71.8
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 9.4e-127 458.0 438 58.4
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.8e-125 453.8 387 66.9
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 8.5e-120 434.9 387 59.4
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.4e-114 416.8 380 59.7
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 9.4e-111 404.8 422 49.5
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.3e-109 400.2 291 70.8
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.8e-106 390.6 297 68.7
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.7e-102 375.9 354 59.0
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 6.8e-101 372.1 330 59.1
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 9.5e-95 351.7 370 51.9
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 9.2e-90 335.1 281 63.7
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.2e-89 334.7 458 42.8
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.2e-84 318.2 430 42.3
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 3.2e-82 310.1 452 41.2
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-63 247.7 194 62.9
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-61 241.1 247 54.3
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 7.1e-58 229.2 289 45.3
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.3e-56 224.9 144 78.5
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.3e-56 224.9 128 85.9
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 9.0e-53 212.2 121 85.1
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.7e-48 198.0 159 61.6
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.5e-44 184.9 394 31.7
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-42 177.9 192 49.5
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 6.7e-40 169.5 169 56.8
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 3.7e-30 137.1 118 62.7
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.3e-27 128.6 84 73.8
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 5.5e-26 123.2 87 75.9
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.2e-22 109.4 471 27.2
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 8.2e-22 109.4 123 52.0
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.9e-20 103.2 64 71.9
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.0e-15 88.2 90 53.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.8e-14 83.6 79 59.5
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 8.2e-14 82.8 49 75.5
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.8e-11 73.9 62 59.7
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 2.3e-08 64.7 49 63.3
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 8.8e-08 62.8 44 63.6
CBR_g3871 Chara braunii HOM05D005532 ORTHO05D006873 4.8e-06 57.0 99 36.4


User provided reference genes

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