Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 0.0e+00 1195.3 638 100.0
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 3.7e-277 958.0 626 84.5
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.7e-235 818.9 604 75.3
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.7e-235 818.9 606 74.6
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.1e-209 733.8 633 64.9
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.9e-209 733.0 623 66.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 3.4e-206 722.2 644 64.0
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 4.4e-206 721.8 612 65.7
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.8e-206 721.5 612 65.5
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 7.6e-206 721.1 635 64.1
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.8e-205 718.8 594 66.2
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.4e-204 716.1 631 64.0
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 4.2e-204 715.3 629 63.9
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.6e-203 713.4 592 66.9
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.1e-203 713.0 592 66.7
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.1e-203 713.0 610 63.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.7e-203 712.6 633 63.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 6.0e-203 711.4 609 65.5
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.7e-202 709.9 631 63.4
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 3.9e-202 708.8 592 64.5
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.9e-202 708.8 630 63.5
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.5e-201 706.8 596 67.8
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 4.3e-201 705.3 594 64.6
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.1e-199 700.7 633 62.9
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.4e-199 700.3 609 62.7
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.0e-199 698.7 631 63.2
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 9.0e-199 697.6 603 62.7
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.9e-197 691.8 633 62.7
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 4.9e-197 691.8 610 63.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.2e-196 689.1 587 63.2
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 7.1e-196 688.0 603 62.5
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.2e-195 687.2 646 61.0
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-195 686.4 592 63.2
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 2.7e-195 686.0 604 62.4
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 6.0e-195 684.9 592 63.0
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.0e-195 684.9 587 64.1
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.3e-194 683.7 603 62.4
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.8e-194 683.3 586 63.3
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.5e-193 679.5 586 63.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.1e-192 676.4 573 63.4
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 6.2e-192 674.9 604 60.4
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.4e-191 673.7 586 61.9
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.8e-191 673.3 604 60.6
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 4.0e-191 672.2 633 60.2
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.5e-190 670.2 646 59.8
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 3.8e-189 665.6 607 60.1
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.9e-189 665.2 631 61.3
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 8.4e-189 664.5 592 60.8
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.4e-188 663.7 637 57.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 9.3e-188 661.0 603 60.5
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.2e-187 660.6 644 59.6
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-187 659.8 603 60.5
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 9.6e-185 651.0 559 64.2
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.6e-184 650.2 631 58.5
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.8e-183 646.7 603 59.7
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 4.0e-183 645.6 641 57.1
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 5.8e-182 641.7 626 56.7
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 2.9e-181 639.4 604 58.8
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 3.8e-181 639.0 628 58.8
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.2e-179 634.0 603 58.5
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.2e-179 634.0 604 58.6
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.6e-179 633.6 648 55.1
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.0e-179 631.7 525 64.6
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.0e-178 630.9 621 56.7
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.3e-178 630.6 629 56.0
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 8.7e-178 627.9 621 56.5
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 4.3e-177 625.5 621 56.5
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 4.3e-177 625.5 621 56.5
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 4.3e-177 625.5 621 56.5
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.2e-176 623.2 621 56.4
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 4.8e-176 622.1 614 57.8
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 8.2e-176 621.3 606 57.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.2e-174 617.5 588 58.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 4.5e-174 615.5 620 55.3
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 5.9e-174 615.1 630 55.2
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 5.9e-174 615.1 638 55.6
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.9e-173 612.8 586 58.9
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.0e-173 612.1 615 57.6
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.9e-172 610.1 624 55.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.9e-172 610.1 611 56.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 1.9e-172 610.1 616 58.9
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.2e-171 607.4 628 53.7
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.3e-170 603.2 612 56.0
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.9e-169 600.1 588 57.3
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 5.7e-169 598.6 614 56.0
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 7.4e-169 598.2 624 55.8
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 9.7e-169 597.8 588 56.6
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 9.7e-169 597.8 588 57.1
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.3e-168 597.4 614 55.9
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 3.1e-167 592.8 465 67.5
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 9.1e-167 591.3 604 53.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 8.5e-165 584.7 626 52.2
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.4e-164 583.9 512 61.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 6.7e-162 575.1 654 52.1
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 4.4e-161 572.4 617 54.6
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.8e-160 569.7 598 52.7
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 3.4e-158 562.8 603 53.7
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 2.9e-157 559.7 607 52.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.3e-153 546.2 610 52.6
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.7e-152 542.7 510 57.6
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 4.2e-148 529.3 641 48.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 9.4e-148 528.1 604 50.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.4e-137 493.0 459 58.8
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.8e-136 489.2 467 56.1
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 5.9e-134 482.3 593 47.6
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 4.7e-131 472.6 600 46.2
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.4e-130 471.1 650 44.9
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 4.9e-128 462.6 475 56.2
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.0e-125 454.9 628 46.8
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 2.9e-125 453.4 426 60.6
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 3.7e-120 436.4 604 43.9
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 3.0e-117 426.8 385 59.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.0e-111 405.6 330 64.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.1e-106 391.7 379 57.3
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.1e-106 391.7 598 40.0
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.7e-104 384.4 573 43.5
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.6e-102 377.9 603 39.8
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 7.8e-102 375.6 586 38.6
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 8.6e-101 372.1 603 39.5
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 5.8e-97 359.4 601 38.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-79 301.2 459 41.6
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.6e-67 261.5 225 60.0
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 3.7e-67 260.4 456 36.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.1e-61 240.0 236 58.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 6.9e-58 229.6 306 46.1
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.2e-57 228.8 388 40.2
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 3.8e-56 223.8 242 51.2
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.5e-52 211.8 222 56.8
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 3.7e-51 207.2 307 44.3
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 7.7e-49 199.5 346 39.6
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-48 198.0 221 53.4
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.8e-43 181.0 168 59.5
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.5e-41 175.3 275 41.8
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-39 169.1 166 57.8
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.4e-36 156.4 256 42.6
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 9.1e-34 149.4 207 46.9
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 9.4e-31 139.4 190 45.8
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-27 129.0 115 59.1
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 5.3e-26 123.6 639 25.4
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 7.7e-25 119.8 126 54.8
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.9e-23 115.2 122 52.5
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-22 111.7 163 46.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.8e-20 102.8 162 42.6
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.3e-19 100.1 162 43.8
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 7.0e-18 96.7 171 42.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-17 95.1 91 57.1
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 3.5e-17 94.4 69 71.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 7.7e-17 93.2 110 50.0
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 6.6e-16 90.1 110 48.2
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-14 84.7 54 75.9
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 6.8e-13 80.1 74 55.4
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.1e-10 72.8 54 68.5
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-10 71.6 69 60.9
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 7.0e-10 70.1 71 53.5
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 9.2e-10 69.7 67 47.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.0e-08 66.2 135 34.8
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.7e-08 65.5 216 28.7
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 2.9e-08 64.7 65 55.4
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 2.9e-08 64.7 65 55.4
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 3.9e-08 64.3 67 53.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 1.1e-07 62.8 104 45.2
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 1.6e-06 58.9 104 31.7
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 4.7e-06 57.4 52 55.8


User provided reference genes

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