Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23093 Corylus avellana HOM05D000738 ORTHO05D025196 7.8e-155 550.4 280 100.0
Haze_23092 Corylus avellana HOM05D000738 ORTHO05D025196 3.2e-100 369.0 283 72.4
Haze_23089 Corylus avellana HOM05D000738 ORTHO05D025196 8.8e-66 254.6 140 93.6
Haze_27560 Corylus avellana HOM05D000738 ORTHO05D025196 2.7e-59 233.0 133 89.5
Cfa009736 Carpinus fangiana HOM05D000738 ORTHO05D000675 1.6e-51 207.2 117 91.5
QL01p005282 Quercus lobata HOM05D000738 ORTHO05D000675 3.6e-35 152.9 129 64.3
Cfa009738 Carpinus fangiana HOM05D000738 ORTHO05D000675 5.8e-33 145.6 82 89.0
Atru.chr3.2596 Acer truncatum HOM05D000738 ORTHO05D000675 2.5e-28 130.2 132 55.3
CiPaw.13G163400 Carya illinoinensis HOM05D000738 ORTHO05D000675 6.2e-27 125.6 148 50.0
Duzib168G2329 Durio zibethinus HOM05D000738 ORTHO05D000675 1.1e-26 124.8 153 49.0
TAR623G1363 Trochodendron aralioides HOM05D000738 ORTHO05D000675 1.5e-25 120.9 132 49.2
TAR623G1326 Trochodendron aralioides HOM05D000738 ORTHO05D000675 3.4e-25 119.8 132 49.2
Thecc.09G228100 Theobroma cacao HOM05D000738 ORTHO05D000675 3.7e-24 116.3 127 50.4
Manes.06G166700 Manihot esculenta HOM05D000738 ORTHO05D000675 1.0e-21 108.2 87 64.4
Ciclev10015011m.g Citrus clementina HOM05D000738 ORTHO05D000675 5.1e-21 105.9 132 51.5
Dinv24118 Davidia involucrata HOM05D000738 ORTHO05D000675 1.2e-19 101.3 132 42.4
Dinv18092 Davidia involucrata HOM05D000738 ORTHO05D000675 2.1e-19 100.5 138 41.3
TAR369G0947 Trochodendron aralioides HOM05D000738 ORTHO05D000675 2.8e-19 100.1 133 45.1
Thecc.05G164400 Theobroma cacao HOM05D000738 ORTHO05D000675 1.4e-18 97.8 131 44.3
Haze_19918 Corylus avellana HOM05D000738 ORTHO05D000675 3.1e-18 96.7 123 44.7
Nn7g36177 Nelumbo nucifera HOM05D000738 ORTHO05D000675 3.1e-18 96.7 123 45.5
TWI60G1577 Tripterygium wilfordii HOM05D000738 ORTHO05D000675 4.0e-18 96.3 133 48.9
Cpa.g.sc84.79 Carica papaya HOM05D000738 ORTHO05D000675 4.4e-17 92.8 135 44.4
CiPaw.09G034300 Carya illinoinensis HOM05D000738 ORTHO05D000675 4.4e-17 92.8 106 45.3
QL07p021913 Quercus lobata HOM05D000738 ORTHO05D000675 7.6e-17 92.0 123 43.1
Cfa009737 Carpinus fangiana HOM05D000738 ORTHO05D000675 1.7e-16 90.9 52 88.5
COL.COLO4_24847 Corchorus olitorius HOM05D000738 ORTHO05D000675 1.7e-16 90.9 125 47.2
CiPaw.10G030500 Carya illinoinensis HOM05D000738 ORTHO05D000675 2.2e-16 90.5 107 43.9
GSVIVG01025304001 Vitis vinifera HOM05D000738 ORTHO05D000675 3.8e-16 89.7 108 50.0
Ciclev10004527m.g Citrus clementina HOM05D000738 ORTHO05D000675 4.9e-16 89.4 135 40.7
Potri.001G018700 Populus trichocarpa HOM05D000738 ORTHO05D000675 4.9e-16 89.4 76 60.5
Potri.016G051900 Populus trichocarpa HOM05D000738 ORTHO05D000675 6.4e-16 89.0 145 37.9
Cfa016872 Carpinus fangiana HOM05D000738 ORTHO05D000675 1.4e-15 87.8 135 39.3
Duzib093G0290 Durio zibethinus HOM05D000738 ORTHO05D000675 1.4e-15 87.8 132 43.9
Sabra01G0013300 Salix brachista HOM05D000738 ORTHO05D000675 4.2e-15 86.3 76 60.5
Manes.08G047800 Manihot esculenta HOM05D000738 ORTHO05D000675 9.3e-15 85.1 124 38.7
CSS0024240 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 1.2e-14 84.7 93 50.5
Duzib106G1391 Durio zibethinus HOM05D000738 ORTHO05D000675 1.2e-14 84.7 131 40.5
MBI01_g27618_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D000675 2.1e-14 84.0 99 46.5
CANSAT80G0761 Cannabis sativa HOM05D000738 ORTHO05D000675 4.6e-14 82.8 143 38.5
COL.COLO4_28710 Corchorus olitorius HOM05D000738 ORTHO05D000675 4.6e-14 82.8 141 38.3
Gohir.A08G013100 Gossypium hirsutum HOM05D000738 ORTHO05D000675 4.6e-14 82.8 146 39.7
Potri.006G056300 Populus trichocarpa HOM05D000738 ORTHO05D000675 7.8e-14 82.0 123 38.2
Sabra16G0055500 Salix brachista HOM05D000738 ORTHO05D004372 7.8e-14 82.0 171 33.9
Gorai.004G018800 Gossypium raimondii HOM05D000738 ORTHO05D000675 1.0e-13 81.6 85 52.9
Gohir.D08G023500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 1.3e-13 81.3 163 38.0
Gorai.006G139000 Gossypium raimondii HOM05D000738 ORTHO05D000675 1.7e-13 80.9 131 36.6
Gohir.D09G121500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 2.3e-13 80.5 131 36.6
Potri.003G205400 Populus trichocarpa HOM05D000738 ORTHO05D000675 2.3e-13 80.5 141 39.7
RcHm_v2.0_Chr3g0480931 Rosa chinensis HOM05D000738 ORTHO05D000675 2.3e-13 80.5 81 50.6
Sabra06G0039800 Salix brachista HOM05D000738 ORTHO05D004372 2.3e-13 80.5 123 37.4
CSS0039295 Camellia sinensis var. sinensis HOM05D000738 ORTHO05D000675 3.0e-13 80.1 142 37.3
FvH4_6g23080 Fragaria vesca HOM05D000738 ORTHO05D000675 5.1e-13 79.3 81 50.6
FAN09G1318 Fragaria x ananassa HOM05D000738 ORTHO05D000675 5.1e-13 79.3 87 48.3
FAN14G5456 Fragaria x ananassa HOM05D000738 ORTHO05D000675 5.1e-13 79.3 81 50.6
FAN05G4282 Fragaria x ananassa HOM05D000738 ORTHO05D000675 8.7e-13 78.6 81 49.4
Actinidia20287 Actinidia chinensis HOM05D000738 ORTHO05D000675 1.5e-12 77.8 132 39.4
PGR119G2358 Punica granatum HOM05D000738 ORTHO05D000675 1.5e-12 77.8 128 40.6
Gohir.A09G124500 Gossypium hirsutum HOM05D000738 ORTHO05D000675 1.9e-12 77.4 131 36.6
Manes.09G029900 Manihot esculenta HOM05D000738 ORTHO05D000675 3.3e-12 76.6 124 37.9
Actinidia09363 Actinidia chinensis HOM05D000738 ORTHO05D000675 5.6e-12 75.9 132 39.4
Eucgr.A02404 Eucalyptus grandis HOM05D000738 ORTHO05D000675 5.6e-12 75.9 137 35.8
Cpa.g.sc85.129 Carica papaya HOM05D000738 ORTHO05D000675 1.3e-11 74.7 132 37.9
Rhsim13G0223900 Rhododendron simsii HOM05D000738 ORTHO05D000675 1.6e-11 74.3 115 41.7
ClCG04G000580 Citrullus lanatus HOM05D000738 ORTHO05D000675 2.8e-11 73.6 104 40.4
HPP92_015772 Vanilla planifolia HOM05D000738 ORTHO05D023254 3.6e-11 73.2 86 47.7
Gohir.D01G186000 Gossypium hirsutum HOM05D000738 ORTHO05D000675 4.8e-11 72.8 136 37.5
Gorai.002G229400 Gossypium raimondii HOM05D000738 ORTHO05D000675 4.8e-11 72.8 136 37.5
vmacro04185 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 4.8e-11 72.8 125 39.2
MELO3C009063.2 Cucumis melo HOM05D000738 ORTHO05D000675 1.4e-10 71.2 104 40.4
Sed0010581 Sechium edule HOM05D000738 ORTHO05D000675 1.4e-10 71.2 158 35.4
Prupe.7G068700 Prunus persica HOM05D000738 ORTHO05D000675 1.8e-10 70.9 119 36.1
Sed0013343 Sechium edule HOM05D000738 ORTHO05D000675 2.4e-10 70.5 120 39.2
Aqoxy1G00216 Aquilegia oxysepala HOM05D000738 ORTHO05D000675 3.1e-10 70.1 143 33.6
DCAR_013574 Daucus carota HOM05D000738 ORTHO05D000675 4.0e-10 69.7 117 35.9
Peaxi162Scf00029g03217 Petunia axillaris HOM05D000738 ORTHO05D000675 4.0e-10 69.7 101 45.5
Nitab4.5_0000452g0100 Nicotiana tabacum HOM05D000738 ORTHO05D000675 5.3e-10 69.3 116 36.2
Nitab4.5_0003074g0020 Nicotiana tabacum HOM05D000738 ORTHO05D000675 5.3e-10 69.3 116 36.2
Nitab4.5_0001347g0070 Nicotiana tabacum HOM05D000738 ORTHO05D000675 6.9e-10 68.9 134 35.1
Nitab4.5_0004063g0020 Nicotiana tabacum HOM05D000738 ORTHO05D000675 1.2e-09 68.2 134 35.1
Solyc10g080390.2 Solanum lycopersicum HOM05D000738 ORTHO05D000675 1.5e-09 67.8 154 33.1
Sopen10g030930 Solanum pennellii HOM05D000738 ORTHO05D000675 1.5e-09 67.8 154 33.1
CAN.G115.7 Capsicum annuum HOM05D000738 ORTHO05D000675 2.6e-09 67.0 131 35.1
PGSC0003DMG401023679 Solanum tuberosum HOM05D000738 ORTHO05D000675 2.6e-09 67.0 154 33.1
Peaxi162Scf00189g00525 Petunia axillaris HOM05D000738 ORTHO05D000675 4.4e-09 66.2 89 38.2
Cc06_g16510 Coffea canephora HOM05D000738 ORTHO05D000675 5.8e-09 65.9 138 33.3
Nn2g15422 Nelumbo nucifera HOM05D000738 ORTHO05D025196 5.8e-09 65.9 108 39.8
PGR004G0104 Punica granatum HOM05D000738 ORTHO05D000675 5.8e-09 65.9 117 36.8
Hma1.2p1_0621F.1_g190600 Hydrangea macrophylla HOM05D000738 ORTHO05D000675 7.6e-09 65.5 75 48.0
arahy.Tifrunner.gnm1.ann1.3QQJ98 Arachis hypogaea HOM05D000738 ORTHO05D000675 1.7e-08 64.3 140 36.4
arahy.Tifrunner.gnm1.ann1.TH8WCF Arachis hypogaea HOM05D000738 ORTHO05D000675 1.7e-08 64.3 140 36.4
CsaV3_4G031440 Cucumis sativus L. HOM05D000738 ORTHO05D000675 1.7e-08 64.3 104 39.4
Lj1g0022537 Lotus japonicus HOM05D000738 ORTHO05D000675 1.7e-08 64.3 123 36.6
Os02g0590800 Oryza sativa ssp. japonica HOM05D000738 ORTHO05D000675 1.7e-08 64.3 73 50.7
CAN.G222.95 Capsicum annuum HOM05D000738 ORTHO05D000675 2.9e-08 63.5 141 31.9
Cc01_g04480 Coffea canephora HOM05D000738 ORTHO05D000675 2.9e-08 63.5 99 38.4
ECA248G3361 Erigeron canadensis HOM05D000738 ORTHO05D000675 2.9e-08 63.5 64 51.6
Oeu008123.1 Olea europaea HOM05D000738 ORTHO05D000675 2.9e-08 63.5 84 38.1
THA.LOC104817900 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 2.9e-08 63.5 69 47.8
Zm00001eb245690 Zea mays HOM05D000738 ORTHO05D000675 2.9e-08 63.5 86 45.3
DCAR_017001 Daucus carota HOM05D000738 ORTHO05D000675 3.8e-08 63.2 146 31.5
Glyma.19G143000 Glycine max HOM05D000738 ORTHO05D000675 3.8e-08 63.2 107 41.1
Actinidia06887 Actinidia chinensis HOM05D000738 ORTHO05D000675 4.9e-08 62.8 97 42.3
Aa31LG8G7680 Aethionema arabicum HOM05D000738 ORTHO05D000675 6.4e-08 62.4 81 40.7
Lsat_1_v5_gn_5_163821 Lactuca sativa HOM05D000738 ORTHO05D000675 6.4e-08 62.4 55 58.2
SGA_v2.0_scaffold247G44852 Striga asiatica HOM05D000738 ORTHO05D000675 1.1e-07 61.6 126 35.7
Thhalv10020784m.g Eutrema salsugineum HOM05D000738 ORTHO05D000675 1.4e-07 61.2 71 45.1
MD12G1065800 Malus domestica HOM05D000738 ORTHO05D000675 1.4e-07 61.2 151 26.5
vmacro07871 Vaccinium macrocarpon HOM05D000738 ORTHO05D000675 1.4e-07 61.2 86 41.9
HanXRQChr01g0008431 Helianthus annuus HOM05D000738 ORTHO05D000675 1.9e-07 60.8 75 49.3
HanXRQChr13g0390641 Helianthus annuus HOM05D000738 ORTHO05D000675 2.4e-07 60.5 53 56.6
Lj7C597T25 Lonicera japonica HOM05D000738 ORTHO05D000675 2.4e-07 60.5 130 35.4
Lalb_Chr20g0110931 Lupinus albus HOM05D000738 ORTHO05D000675 2.4e-07 60.5 108 38.0
Sc16g0011580 Simmondsia chinensis HOM05D000738 ORTHO05D000675 2.4e-07 60.5 93 46.2
BcaC05g28198 Brassica carinata HOM05D000738 ORTHO05D000675 3.2e-07 60.1 71 43.7
A05p27860 Brassica napus HOM05D000738 ORTHO05D000675 3.2e-07 60.1 71 43.7
C05p43200 Brassica napus HOM05D000738 ORTHO05D000675 3.2e-07 60.1 71 43.7
BolC5t33050H Brassica oleracea HOM05D000738 ORTHO05D000675 3.2e-07 60.1 71 43.7
BraA05t21673Z Brassica rapa HOM05D000738 ORTHO05D000675 3.2e-07 60.1 71 43.7
Lj5g0022925 Lotus japonicus HOM05D000738 ORTHO05D000675 3.2e-07 60.1 122 32.0
Phvul.001G137000 Phaseolus vulgaris HOM05D000738 ORTHO05D000675 3.2e-07 60.1 103 38.8
Sp3g18880 Schrenkiella parvula HOM05D000738 ORTHO05D000675 3.2e-07 60.1 114 35.1
Solyc03g059250.3 Solanum lycopersicum HOM05D000738 ORTHO05D000675 3.2e-07 60.1 68 42.6
AT3G20860 Arabidopsis thaliana HOM05D000738 ORTHO05D000675 4.2e-07 59.7 71 43.7
Carub.0003s2083 Capsella rubella HOM05D000738 ORTHO05D000675 4.2e-07 59.7 71 43.7
CARHR096730 Cardamine hirsuta HOM05D000738 ORTHO05D000675 4.2e-07 59.7 71 43.7
Medtr7g092360 Medicago truncatula HOM05D000738 ORTHO05D000675 5.4e-07 59.3 94 40.4
Oeu015674.3 Olea europaea HOM05D000738 ORTHO05D000675 5.4e-07 59.3 109 39.4
Ah.06g193640 Amaranthus hybridus HOM05D000738 ORTHO05D000675 7.1e-07 58.9 83 44.6
AUR62024385 Chenopodium quinoa HOM05D000738 ORTHO05D000675 9.3e-07 58.5 117 35.0
Psat6g090920 Pisum sativum HOM05D000738 ORTHO05D000675 9.3e-07 58.5 118 37.3
Hund24748 Selenicereus undatus HOM05D000738 ORTHO05D000675 9.3e-07 58.5 109 36.7
PSO384G1117 Papaver somniferum HOM05D000738 ORTHO05D000675 1.2e-06 58.2 118 35.6
Peaxi162Scf00406g00614 Petunia axillaris HOM05D000738 ORTHO05D000675 1.2e-06 58.2 126 32.5
Hund07533 Selenicereus undatus HOM05D000738 ORTHO05D000675 1.2e-06 58.2 61 47.5
PGSC0003DMG400013590 Solanum tuberosum HOM05D000738 ORTHO05D000675 1.2e-06 58.2 99 42.4
AUR62019271 Chenopodium quinoa HOM05D000738 ORTHO05D000675 1.6e-06 57.8 103 38.8
Glyma.03G140100 Glycine max HOM05D000738 ORTHO05D000675 1.6e-06 57.8 107 38.3
MD14G1065800 Malus domestica HOM05D000738 ORTHO05D000675 1.6e-06 57.8 145 26.2
Sc19g0006830 Simmondsia chinensis HOM05D000738 ORTHO05D000675 1.6e-06 57.8 109 38.5
Nitab4.5_0002766g0090 Nicotiana tabacum HOM05D000455 ORTHO05D010375 2.1e-06 57.4 99 41.4
Sopen03g013600 Solanum pennellii HOM05D000738 ORTHO05D000675 2.1e-06 57.4 139 28.8
AUR62000097 Chenopodium quinoa HOM05D000738 ORTHO05D000675 2.7e-06 57.0 99 40.4
AUR62025969 Chenopodium quinoa HOM05D000738 ORTHO05D000675 2.7e-06 57.0 113 33.6
Rhsim03G0011700 Rhododendron simsii HOM05D000738 ORTHO05D000675 2.7e-06 57.0 83 42.2
PGSC0003DMG400033929 Solanum tuberosum HOM05D000738 ORTHO05D000675 2.7e-06 57.0 139 28.8
AL3G34800 Arabidopsis lyrata HOM05D000738 ORTHO05D000675 3.5e-06 56.6 128 33.6
EL10Ac4g10298 Beta vulgaris HOM05D000738 ORTHO05D000675 3.5e-06 56.6 79 43.0
Ca_08486_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 3.5e-06 56.6 49 57.1
Ca_10138_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 4.6e-06 56.2 69 47.8
Lalb_Chr25g0287481 Lupinus albus HOM05D000738 ORTHO05D000675 4.6e-06 56.2 44 61.4
MSTRG.18412 Avicennia marina HOM05D000738 ORTHO05D000675 6.0e-06 55.8 54 51.9
MSTRG.6455 Avicennia marina HOM05D000738 ORTHO05D000675 6.0e-06 55.8 127 31.5
Nitab4.5_0004806g0050 Nicotiana tabacum HOM05D000738 ORTHO05D019834 6.0e-06 55.8 44 59.1
Psat5g260480 Pisum sativum HOM05D000738 ORTHO05D000675 6.0e-06 55.8 44 61.4
THA.LOC104819141 Tarenaya hassleriana HOM05D000738 ORTHO05D000675 6.0e-06 55.8 87 41.4
TPR.G22786 Trifolium pratense HOM05D000738 ORTHO05D000675 6.0e-06 55.8 146 32.9
Nitab4.5_0002766g0080 Nicotiana tabacum HOM05D000738 ORTHO05D000675 7.9e-06 55.5 117 40.2


User provided reference genes

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