Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22995 Corylus avellana HOM05D006595 ORTHO05D008238 4.9e-81 304.7 183 100.0
Cfa009626 Carpinus fangiana HOM05D006595 ORTHO05D008238 1.8e-80 302.8 183 99.5
QL01p010272 Quercus lobata HOM05D006595 ORTHO05D008238 1.2e-68 263.5 182 85.2
CiPaw.13G171400 Carya illinoinensis HOM05D006595 ORTHO05D008238 2.0e-63 246.1 183 83.1
Prupe.6G012000 Prunus persica HOM05D006595 ORTHO05D008238 1.1e-56 223.8 183 76.0
RcHm_v2.0_Chr5g0081351 Rosa chinensis HOM05D006595 ORTHO05D008238 1.2e-52 210.3 183 72.1
FAN17G0104 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.1e-52 207.6 183 71.6
MD03G1011600 Malus domestica HOM05D006595 ORTHO05D008238 8.1e-52 207.6 183 72.1
Atru.chr3.2190 Acer truncatum HOM05D006595 ORTHO05D008238 1.1e-51 207.2 188 72.9
FvH4_3g44681 Fragaria vesca HOM05D006595 ORTHO05D008238 1.5e-50 203.4 183 70.5
FAN25G3451 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.4e-50 202.2 183 70.5
Manes.03G089200 Manihot esculenta HOM05D006595 ORTHO05D008238 3.4e-50 202.2 187 70.6
Dinv13419 Davidia involucrata HOM05D006595 ORTHO05D008238 1.9e-48 196.4 168 75.0
CANSAT11G0726 Cannabis sativa HOM05D006595 ORTHO05D008238 2.4e-48 196.1 187 69.5
PGR102G3301 Punica granatum HOM05D006595 ORTHO05D008238 7.1e-48 194.5 190 70.5
GSVIVG01025384001 Vitis vinifera HOM05D006595 ORTHO05D008238 1.6e-47 193.4 184 73.4
ClCG02G023820 Citrullus lanatus HOM05D006595 ORTHO05D008238 2.1e-47 193.0 186 68.3
TAR636G1600 Trochodendron aralioides HOM05D006595 ORTHO05D008238 4.6e-47 191.8 178 71.9
CsaV3_4G023550 Cucumis sativus L. HOM05D006595 ORTHO05D008238 7.8e-47 191.0 187 67.9
TWI34G0416 Tripterygium wilfordii HOM05D006595 ORTHO05D008238 7.8e-47 191.0 190 70.0
FAN21G3045 Fragaria x ananassa HOM05D000750 ORTHO05D000714 8.7e-46 187.6 162 72.8
Sed0019652 Sechium edule HOM05D006595 ORTHO05D008238 1.1e-45 187.2 183 66.7
Potri.001G009800 Populus trichocarpa HOM05D006595 ORTHO05D008238 2.5e-45 186.0 190 68.4
Ciclev10016858m.g Citrus clementina HOM05D006595 ORTHO05D008238 5.6e-45 184.9 186 67.2
FAN16G1668 Fragaria x ananassa HOM05D000750 ORTHO05D000714 5.6e-45 184.9 162 72.2
MELO3C014661.2 Cucumis melo HOM05D006595 ORTHO05D008238 2.1e-44 183.0 185 66.5
Eucgr.B03632 Eucalyptus grandis HOM05D006595 ORTHO05D008238 2.8e-44 182.6 191 68.6
Sabra01G0007800 Salix brachista HOM05D006595 ORTHO05D008238 4.7e-44 181.8 209 64.1
Duzib168G0997 Durio zibethinus HOM05D006595 ORTHO05D008238 1.4e-43 180.3 186 66.7
Cpa.g.sc119.91 Carica papaya HOM05D006595 ORTHO05D008238 1.8e-43 179.9 186 69.9
EL10Ac4g10339 Beta vulgaris HOM05D006595 ORTHO05D008238 2.0e-42 176.4 188 64.9
Oeu038858.2 Olea europaea HOM05D006595 ORTHO05D008238 2.0e-42 176.4 183 68.3
SalBow6G7140 Salvia bowleyana HOM05D006595 ORTHO05D008238 2.6e-42 176.0 168 69.6
Lj2A706G26 Lonicera japonica HOM05D006595 ORTHO05D008238 5.8e-42 174.9 162 73.5
SGA_v2.0_scaffold78G25462 Striga asiatica HOM05D006595 ORTHO05D008238 7.6e-42 174.5 185 63.2
Peaxi162Scf00441g00213 Petunia axillaris HOM05D006595 ORTHO05D008238 1.3e-41 173.7 181 66.3
Gohir.A08G079300 Gossypium hirsutum HOM05D006595 ORTHO05D008238 2.2e-41 172.9 186 64.5
Dinv34743 Davidia involucrata HOM05D006595 ORTHO05D008238 6.4e-41 171.4 132 80.3
Rhsim13G0228400 Rhododendron simsii HOM05D000750 ORTHO05D000714 6.4e-41 171.4 162 72.8
Gohir.A11G206900 Gossypium hirsutum HOM05D006595 ORTHO05D008238 1.1e-40 170.6 186 64.0
Nn7g35969 Nelumbo nucifera HOM05D006595 ORTHO05D008238 1.9e-40 169.9 192 61.5
Gohir.D11G216800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 3.2e-40 169.1 186 63.4
PGSC0003DMG401032143 Solanum tuberosum HOM05D006595 ORTHO05D008238 3.2e-40 169.1 155 71.6
Aqoxy2G00094 Aquilegia oxysepala HOM05D006595 ORTHO05D008238 5.4e-40 168.3 171 63.7
Gohir.D08G088800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 7.1e-40 167.9 186 62.9
Gorai.004G093500 Gossypium raimondii HOM05D006595 ORTHO05D008238 9.3e-40 167.5 186 62.9
CSS0011176 Camellia sinensis var. sinensis HOM05D006595 ORTHO05D008238 2.1e-39 166.4 159 69.8
Gorai.007G232900 Gossypium raimondii HOM05D006595 ORTHO05D008238 4.6e-39 165.2 159 68.6
AUR62019207 Chenopodium quinoa HOM05D006595 ORTHO05D008238 6.0e-39 164.9 185 62.2
Cc01_g00990 Coffea canephora HOM05D006595 ORTHO05D008238 1.7e-38 163.3 183 63.9
Sopen01g002130 Solanum pennellii HOM05D006595 ORTHO05D008238 3.0e-38 162.5 161 69.6
CAN.G140.24 Capsicum annuum HOM05D006595 ORTHO05D008238 5.1e-38 161.8 170 67.6
Lj5g0010961 Lotus japonicus HOM05D006595 ORTHO05D008238 5.1e-38 161.8 153 69.3
Sc16g0012000 Simmondsia chinensis HOM05D006595 ORTHO05D008238 6.6e-38 161.4 163 68.1
Aa31sc409G10 Aethionema arabicum HOM05D006595 ORTHO05D008238 1.5e-37 160.2 189 61.9
CARHR129020 Cardamine hirsuta HOM05D006595 ORTHO05D008238 2.5e-37 159.5 183 60.7
Migut.F01376 Erythranthe guttata HOM05D006595 ORTHO05D008238 2.5e-37 159.5 164 66.5
QL01p010258 Quercus lobata HOM05D006595 ORTHO05D008238 3.3e-37 159.1 143 62.9
QL08p062509 Quercus lobata HOM05D006595 ORTHO05D008238 3.3e-37 159.1 143 62.9
Nitab4.5_0005477g0080 Nicotiana tabacum HOM05D006595 ORTHO05D008238 5.6e-37 158.3 170 57.1
Thhalv10017283m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 7.3e-37 157.9 188 61.7
AT2G34860 Arabidopsis thaliana HOM05D006595 ORTHO05D008238 9.6e-37 157.5 186 61.3
BraA04t18167Z Brassica rapa HOM05D006595 ORTHO05D008238 9.6e-37 157.5 190 61.1
AUR62000037 Chenopodium quinoa HOM05D006595 ORTHO05D008238 9.6e-37 157.5 188 60.1
Lj2A705G49 Lonicera japonica HOM05D006595 ORTHO05D008238 1.3e-36 157.1 133 65.4
Sp4g17140 Schrenkiella parvula HOM05D006595 ORTHO05D008238 1.6e-36 156.8 188 60.6
Nitab4.5_0001620g0030 Nicotiana tabacum HOM05D006595 ORTHO05D008238 2.1e-36 156.4 170 55.9
C04p64040 Brassica napus HOM05D006595 ORTHO05D008238 2.8e-36 156.0 190 60.5
Carub.0004s1654 Capsella rubella HOM05D006595 ORTHO05D008238 2.8e-36 156.0 189 60.3
Thecc.09G215500 Theobroma cacao HOM05D006595 ORTHO05D008238 2.8e-36 156.0 132 62.1
BcaC02g07751 Brassica carinata HOM05D006595 ORTHO05D008238 3.6e-36 155.6 190 60.5
BolC4t27880H Brassica oleracea HOM05D006595 ORTHO05D008238 3.6e-36 155.6 190 60.5
Phvul.007G006200 Phaseolus vulgaris HOM05D006595 ORTHO05D008238 4.8e-36 155.2 154 67.5
A04p26620 Brassica napus HOM05D006595 ORTHO05D008238 1.1e-35 154.1 190 60.0
Solyc01g006130.4 Solanum lycopersicum HOM05D006595 ORTHO05D008238 1.8e-35 153.3 157 67.5
Glyma.10G293900 Glycine max HOM05D006595 ORTHO05D008238 2.4e-35 152.9 156 68.6
THA.LOC104815114 Tarenaya hassleriana HOM05D006595 ORTHO05D008238 2.4e-35 152.9 194 58.8
MSTRG.208 Avicennia marina HOM05D006595 ORTHO05D008238 3.1e-35 152.5 162 64.8
CDE04G0274 Ceratophyllum demersum HOM05D006595 ORTHO05D008238 4.0e-35 152.1 161 64.0
BcaB06g28828 Brassica carinata HOM05D006595 ORTHO05D008238 5.3e-35 151.8 190 60.5
ECA248G3199 Erigeron canadensis HOM05D006595 ORTHO05D008238 5.3e-35 151.8 185 60.5
MSTRG.8324 Avicennia marina HOM05D006595 ORTHO05D008238 9.0e-35 151.0 163 65.0
COL.COLO4_10447 Corchorus olitorius HOM05D006595 ORTHO05D008238 1.2e-34 150.6 196 47.4
C04p13910 Brassica napus HOM05D006595 ORTHO05D008238 7.6e-34 147.9 187 58.8
BolC4t22980H Brassica oleracea HOM05D006595 ORTHO05D008238 7.6e-34 147.9 187 58.8
BcaC02g11570 Brassica carinata HOM05D006595 ORTHO05D008238 2.2e-33 146.4 188 59.0
PSO339G5391 Papaver somniferum HOM05D006595 ORTHO05D008238 2.9e-33 146.0 187 55.1
PSO384G3168 Papaver somniferum HOM05D006595 ORTHO05D008238 2.9e-33 146.0 187 55.6
Ah.04g161600 Amaranthus hybridus HOM05D000750 ORTHO05D000714 3.8e-33 145.6 152 69.1
Lalb_Chr02g0143771 Lupinus albus HOM05D006595 ORTHO05D008238 3.8e-33 145.6 144 71.5
BraA05t20025Z Brassica rapa HOM05D006595 ORTHO05D008238 4.9e-33 145.2 187 58.3
Psat6g238960 Pisum sativum HOM05D006595 ORTHO05D008238 7.1e-32 141.4 184 55.4
A05p10810 Brassica napus HOM05D006595 ORTHO05D008238 1.2e-31 140.6 188 58.0
Ca_11377_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 1.8e-30 136.7 177 56.5
Medtr1g116170 Medicago truncatula HOM05D006595 ORTHO05D008238 2.3e-30 136.3 125 74.4
arahy.Tifrunner.gnm1.ann1.ZL64GD Arachis hypogaea HOM05D006595 ORTHO05D008238 1.9e-29 133.3 137 66.4
Hund06674 Selenicereus undatus HOM05D006595 ORTHO05D008238 3.3e-29 132.5 131 69.5
TPR.G10430 Trifolium pratense HOM05D006595 ORTHO05D008238 7.4e-29 131.3 128 71.9
Os08g0463900 Oryza sativa ssp. japonica HOM05D006595 ORTHO05D008238 1.3e-28 130.6 142 65.5
HPP92_026734 Vanilla planifolia HOM05D006595 ORTHO05D008238 2.1e-28 129.8 164 61.0
vmacro04249 Vaccinium macrocarpon HOM05D006595 ORTHO05D008238 2.8e-28 129.4 297 36.4
HPP92_016182 Vanilla planifolia HOM05D006595 ORTHO05D008238 6.2e-28 128.3 154 63.6
ATR1149G131 Amborella trichopoda HOM05D006595 ORTHO05D008238 2.2e-25 119.8 89 86.5
unitig_747.g21415 Utricularia gibba HOM05D006595 ORTHO05D008238 2.9e-25 119.4 175 57.1
Glyma.20G243800 Glycine max HOM05D006595 ORTHO05D008238 3.8e-25 119.0 101 76.2
Lsat_1_v5_gn_1_68280 Lactuca sativa HOM05D006595 ORTHO05D008238 1.9e-24 116.7 150 50.0
AL4G30870 Arabidopsis lyrata HOM05D006595 ORTHO05D008238 2.4e-24 116.3 191 43.5
arahy.Tifrunner.gnm1.ann1.SSSL8J Arachis hypogaea HOM05D006595 ORTHO05D008238 2.4e-24 116.3 152 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 1.2e-23 114.0 161 57.1
HanXRQChr11g0344931 Helianthus annuus HOM05D006595 ORTHO05D008238 1.2e-23 114.0 115 53.9
SEGI_11759 Sequoiadendron giganteum HOM05D006595 ORTHO05D008238 3.0e-22 109.4 167 53.3
Mapoly0120s0023 Marchantia polymorpha HOM05D006595 ORTHO05D008238 9.6e-21 104.4 164 50.6
FAN11G2269 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.3e-20 104.0 212 38.7
Pp3c3_12490 Physcomitrium patens HOM05D006595 ORTHO05D008238 2.8e-20 102.8 150 52.7
SMO331G0037 Selaginella moellendorffii HOM05D006595 ORTHO05D008238 3.1e-19 99.4 112 65.2
VMungo0720G3035 Vigna mungo HOM05D006595 ORTHO05D008238 3.1e-19 99.4 117 47.9
MD11G1014500 Malus domestica HOM05D006595 ORTHO05D008238 2.0e-18 96.7 74 66.2
CBR_g22940 Chara braunii HOM05D006595 ORTHO05D008238 1.3e-17 94.0 154 48.1
FAN16G0514 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.8e-17 92.4 77 61.0
FvH4_3g44571 Fragaria vesca HOM05D006595 ORTHO05D008238 4.2e-16 89.0 74 59.5
BcaC07g42181 Brassica carinata HOM05D006595 ORTHO05D008238 7.9e-15 84.7 145 42.1
PRCOL_00006415 Prasinoderma coloniale HOM05D006595 ORTHO05D008238 1.1e-13 80.9 94 62.8
BcaB01g02723 Brassica carinata HOM05D006595 ORTHO05D008238 1.5e-13 80.5 144 40.3
MCO03G122 Micromonas commoda HOM05D006595 ORTHO05D008238 1.1e-11 74.3 136 52.2
Cre11.g475850 Chlamydomonas reinhardtii HOM05D006595 ORTHO05D008238 3.1e-11 72.8 146 34.9
BcaB06g29011 Brassica carinata HOM05D006595 ORTHO05D008238 9.0e-11 71.2 144 38.2
Thhalv10012349m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 1.1e-08 64.3 61 57.4
BcaB01g03109 Brassica carinata HOM05D006595 ORTHO05D008238 5.5e-08 62.0 75 53.3
Thhalv10011829m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 3.6e-07 59.3 66 50.0
FAN21G2764 Fragaria x ananassa HOM05D006595 ORTHO05D008238 3.0e-06 56.2 30 83.3


User provided reference genes

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