Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22913 Corylus avellana HOM05D002872 ORTHO05D003204 9.3e-46 186.8 115 100.0
Cfa009531 Carpinus fangiana HOM05D002872 ORTHO05D003204 1.3e-42 176.4 110 85.5
QL01p007916 Quercus lobata HOM05D002872 ORTHO05D003204 1.5e-24 116.3 77 75.3
Thecc.09G205700 Theobroma cacao HOM05D002872 ORTHO05D003204 3.7e-18 95.1 75 60.0
COL.COLO4_35069 Corchorus olitorius HOM05D002872 ORTHO05D003204 6.3e-18 94.4 75 60.0
MELO3C015562.2 Cucumis melo HOM05D002872 ORTHO05D003204 6.3e-18 94.4 106 49.1
Sed0004485 Sechium edule HOM05D002872 ORTHO05D003204 1.1e-17 93.6 106 47.2
Atru.chr3.2058 Acer truncatum HOM05D002872 ORTHO05D003204 1.8e-17 92.8 82 58.5
ClCG03G014660 Citrullus lanatus HOM05D002872 ORTHO05D003204 4.1e-17 91.7 106 47.2
TWI34G0676 Tripterygium wilfordii HOM05D002872 ORTHO05D003204 4.1e-17 91.7 82 58.5
Oeu018898.1 Olea europaea HOM05D002872 ORTHO05D003204 6.9e-17 90.9 70 64.3
Lj2A888G14 Lonicera japonica HOM05D002872 ORTHO05D003204 5.9e-16 87.8 84 56.0
TAR623G1141 Trochodendron aralioides HOM05D002872 ORTHO05D003204 1.0e-15 87.0 83 57.8
Manes.03G086300 Manihot esculenta HOM05D002872 ORTHO05D003204 1.3e-15 86.7 82 54.9
Ciclev10016445m.g Citrus clementina HOM05D002872 ORTHO05D003204 2.2e-15 85.9 82 57.3
PSO339G4532 Papaver somniferum HOM05D002872 ORTHO05D003204 2.2e-15 85.9 83 57.8
Migut.N00530 Erythranthe guttata HOM05D002872 ORTHO05D003204 6.5e-15 84.3 84 54.8
Eucgr.J01745 Eucalyptus grandis HOM05D002872 ORTHO05D003204 6.5e-15 84.3 84 52.4
PSO384G4623 Papaver somniferum HOM05D002872 ORTHO05D003204 1.1e-14 83.6 83 56.6
Ca_18794_v3 Cicer arietinum L. HOM05D002872 ORTHO05D003204 1.9e-14 82.8 75 54.7
GSVIVG01025507001 Vitis vinifera HOM05D002872 ORTHO05D003204 1.9e-14 82.8 83 54.2
arahy.Tifrunner.gnm1.ann1.WYYM4H Arachis hypogaea HOM05D002872 ORTHO05D003204 2.5e-14 82.4 77 51.9
Hma1.2p1_0589F.1_g184710 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 2.5e-14 82.4 84 51.2
Lsat_1_v5_gn_6_56180 Lactuca sativa HOM05D002872 ORTHO05D003204 5.5e-14 81.3 109 45.0
Dinv01806 Davidia involucrata HOM05D002872 ORTHO05D003204 9.4e-14 80.5 111 44.1
Psat7g134440 Pisum sativum HOM05D002872 ORTHO05D003204 9.4e-14 80.5 75 53.3
Aqoxy386s003 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 1.6e-13 79.7 82 50.0
MBI19_g09318_MAGBIO Magnolia biondii HOM05D002872 ORTHO05D003204 1.6e-13 79.7 83 51.8
Carub.0007s1455 Capsella rubella HOM05D002872 ORTHO05D003204 2.1e-13 79.3 75 46.7
Lj4g0027888 Lotus japonicus HOM05D002872 ORTHO05D003204 3.6e-13 78.6 75 50.7
Solyc01g049960.4 Solanum lycopersicum HOM05D002872 ORTHO05D003204 3.6e-13 78.6 71 54.9
Aqoxy1G00089 Aquilegia oxysepala HOM05D002872 ORTHO05D003204 4.6e-13 78.2 114 39.5
BcaNung02424 Brassica carinata HOM05D002872 ORTHO05D003204 4.6e-13 78.2 82 46.3
Sopen01g019280 Solanum pennellii HOM05D002872 ORTHO05D003204 4.6e-13 78.2 70 55.7
Medtr4g083250 Medicago truncatula HOM05D002872 ORTHO05D003204 6.1e-13 77.8 72 51.4
Potri.001G001300 Populus trichocarpa HOM05D002872 ORTHO05D003204 6.1e-13 77.8 82 48.8
Nitab4.5_0000890g0190 Nicotiana tabacum HOM05D002872 ORTHO05D003204 7.9e-13 77.4 84 50.0
THA.LOC104811711 Tarenaya hassleriana HOM05D002872 ORTHO05D003204 7.9e-13 77.4 109 40.4
Actinidia00918 Actinidia chinensis HOM05D002872 ORTHO05D003204 1.0e-12 77.0 68 58.8
Duzib168G2058 Durio zibethinus HOM05D002872 ORTHO05D003204 1.0e-12 77.0 83 48.2
Nn2g15900 Nelumbo nucifera HOM05D002872 ORTHO05D003204 1.0e-12 77.0 83 49.4
AT4G26410 Arabidopsis thaliana HOM05D002872 ORTHO05D003204 1.8e-12 76.3 81 45.7
Prupe.6G001300 Prunus persica HOM05D002872 ORTHO05D003204 2.3e-12 75.9 77 50.6
DCAR_001960 Daucus carota HOM05D002872 ORTHO05D003204 3.0e-12 75.5 81 48.1
Glyma.20G025000 Glycine max HOM05D002872 ORTHO05D003204 3.0e-12 75.5 108 40.7
Gohir.A13G211000 Gossypium hirsutum HOM05D002872 ORTHO05D003204 3.0e-12 75.5 74 52.7
SGA_v2.0_scaffold6G03331 Striga asiatica HOM05D002872 ORTHO05D003204 3.0e-12 75.5 84 52.4
TPR.G34033 Trifolium pratense HOM05D002872 ORTHO05D003204 3.0e-12 75.5 108 42.6
Peaxi162Scf00186g01511 Petunia axillaris HOM05D002872 ORTHO05D003204 3.9e-12 75.1 70 52.9
C01p22220 Brassica napus HOM05D002872 ORTHO05D003204 6.7e-12 74.3 75 42.7
BolC1t02152H Brassica oleracea HOM05D002872 ORTHO05D003204 6.7e-12 74.3 75 42.7
Cc01_g00260 Coffea canephora HOM05D002872 ORTHO05D003204 6.7e-12 74.3 84 46.4
AL7G26550 Arabidopsis lyrata HOM05D002872 ORTHO05D003204 8.8e-12 73.9 82 43.9
C07p28280 Brassica napus HOM05D002872 ORTHO05D003204 8.8e-12 73.9 82 43.9
BolC7t43369H Brassica oleracea HOM05D002872 ORTHO05D003204 8.8e-12 73.9 82 43.9
A01p17620 Brassica napus HOM05D002872 ORTHO05D003204 1.1e-11 73.6 82 42.7
BraA01t01715Z Brassica rapa HOM05D002872 ORTHO05D003204 1.1e-11 73.6 82 42.7
BcaC09g50695 Brassica carinata HOM05D002872 ORTHO05D003204 1.5e-11 73.2 75 42.7
BolC7t45975H Brassica oleracea HOM05D002872 ORTHO05D003204 2.5e-11 72.4 72 44.4
BraA03t14737Z Brassica rapa HOM05D002872 ORTHO05D003204 4.3e-11 71.6 81 42.0
HanXRQChr02g0057611 Helianthus annuus HOM05D002872 ORTHO05D003204 5.7e-11 71.2 70 52.9
BcaC06g32751 Brassica carinata HOM05D002872 ORTHO05D003204 7.4e-11 70.9 70 44.3
FAN11G0810 Fragaria x ananassa HOM05D002872 ORTHO05D003204 7.4e-11 70.9 77 44.2
FAN21G2326 Fragaria x ananassa HOM05D002872 ORTHO05D003204 7.4e-11 70.9 77 44.2
FAN16G3031 Fragaria x ananassa HOM05D002872 ORTHO05D003204 9.7e-11 70.5 77 44.2
Aa31LG5G11760 Aethionema arabicum HOM05D002872 ORTHO05D003204 1.3e-10 70.1 89 41.6
ATR0068G080 Amborella trichopoda HOM05D002872 ORTHO05D003204 1.7e-10 69.7 79 49.4
FAN25G3552 Fragaria x ananassa HOM05D002872 ORTHO05D003204 1.7e-10 69.7 77 44.2
A03p56670 Brassica napus HOM05D002872 ORTHO05D003204 2.2e-10 69.3 79 41.8
Glyma.07G225100 Glycine max HOM05D002872 ORTHO05D003204 2.2e-10 69.3 75 42.7
Phvul.002G101500 Phaseolus vulgaris HOM05D002872 ORTHO05D003204 2.8e-10 68.9 75 45.3
Sp7g24310 Schrenkiella parvula HOM05D002872 ORTHO05D003204 2.8e-10 68.9 70 44.3
RcHm_v2.0_Chr5g0084061 Rosa chinensis HOM05D002872 ORTHO05D003204 4.8e-10 68.2 81 50.6
VMungo0251G2931 Vigna mungo HOM05D002872 ORTHO05D003204 4.8e-10 68.2 75 44.0
FvH4_3g45950 Fragaria vesca HOM05D002872 ORTHO05D003204 8.2e-10 67.4 77 42.9
CDE08G0031 Ceratophyllum demersum HOM05D002872 ORTHO05D003204 1.1e-09 67.0 84 47.6
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 1.1e-09 67.0 109 37.6
Lalb_Chr09g0328951 Lupinus albus HOM05D002872 ORTHO05D003204 1.4e-09 66.6 64 48.4
MD11G1001100 Malus domestica HOM05D002872 ORTHO05D003204 2.4e-09 65.9 77 45.5
MSTRG.12807 Avicennia marina HOM05D002872 ORTHO05D003204 9.1e-09 63.9 84 45.2
CANSAT11G1709 Cannabis sativa HOM05D002872 ORTHO05D003204 9.1e-09 63.9 109 41.3
CiPaw.13G179400 Carya illinoinensis HOM05D002872 ORTHO05D003204 2.6e-08 62.4 70 50.0
Lsat_1_v5_gn_3_74580 Lactuca sativa HOM05D002872 ORTHO05D022846 2.6e-08 62.4 144 31.2
CsaV3_1G041510 Cucumis sativus L. HOM05D002872 ORTHO05D003204 5.9e-08 61.2 106 36.8
BcaC08g44136 Brassica carinata HOM05D002872 ORTHO05D003204 7.7e-08 60.8 64 40.6
SalBow3G2375 Salvia bowleyana HOM05D002872 ORTHO05D003204 7.7e-08 60.8 84 41.7
Sc16g0012250 Simmondsia chinensis HOM05D002872 ORTHO05D003204 1.0e-07 60.5 70 45.7
Thhalv10026011m.g Eutrema salsugineum HOM05D002872 ORTHO05D003204 2.2e-07 59.3 75 38.7
CARHR233960 Cardamine hirsuta HOM05D002872 ORTHO05D003204 3.8e-07 58.5 82 39.0
CSS0018255 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 5.0e-07 58.2 50 56.0
CSS0025152 Camellia sinensis var. sinensis HOM05D002872 ORTHO05D003204 5.0e-07 58.2 50 56.0
Hma1.2p1_0589F.1_g184720 Hydrangea macrophylla HOM05D002872 ORTHO05D003204 5.0e-07 58.2 50 56.0
Rhsim13G0234800 Rhododendron simsii HOM05D002872 ORTHO05D003204 6.5e-07 57.8 52 53.8
AUR62040893 Chenopodium quinoa HOM05D002872 ORTHO05D003204 8.5e-07 57.4 70 42.9
SEGI_35371 Sequoiadendron giganteum HOM05D002872 ORTHO05D003204 1.1e-06 57.0 85 41.2
arahy.Tifrunner.gnm1.ann1.BJ2ABN Arachis hypogaea HOM05D002872 ORTHO05D003204 3.2e-06 55.5 52 51.9
AUR62042622 Chenopodium quinoa HOM05D002872 ORTHO05D003204 5.5e-06 54.7 84 39.3


User provided reference genes

Program Settings