Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22895 Corylus avellana HOM05D000135 ORTHO05D000816 4.1e-49 198.7 114 100.0
Cfa014171 Carpinus fangiana HOM05D000135 ORTHO05D000816 1.5e-43 180.3 113 85.0
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.3e-26 124.0 108 66.7
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 3.8e-26 122.5 92 73.9
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 3.0e-23 112.8 82 74.4
CiPaw.05G177300 Carya illinoinensis HOM05D000135 ORTHO05D000816 5.1e-23 112.1 110 60.9
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 1.4e-20 104.0 82 70.7
CiPaw.08G079300 Carya illinoinensis HOM05D000135 ORTHO05D000816 4.0e-20 102.4 108 54.6
CiPaw.05G177200 Carya illinoinensis HOM05D000135 ORTHO05D000816 2.2e-18 96.7 94 60.6
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 1.1e-17 94.4 87 63.2
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 2.5e-17 93.2 97 55.7
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 3.2e-17 92.8 83 61.4
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.2e-17 92.4 83 60.2
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 5.5e-17 92.0 83 60.2
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.5e-17 92.0 83 60.2
Thecc.08G097200 Theobroma cacao HOM05D000135 ORTHO05D000816 2.1e-16 90.1 90 56.7
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 7.9e-16 88.2 83 59.0
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 7.9e-16 88.2 93 51.6
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 7.9e-16 88.2 96 52.1
Duzib093G1260 Durio zibethinus HOM05D000135 ORTHO05D000816 1.8e-15 87.0 92 56.5
CiPaw.05G177400 Carya illinoinensis HOM05D000135 ORTHO05D000816 2.3e-15 86.7 75 62.7
TAR381G0615 Trochodendron aralioides HOM05D000135 ORTHO05D000816 3.0e-15 86.3 81 60.5
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 3.9e-15 85.9 89 55.1
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 5.1e-15 85.5 87 56.3
PGR031G1432 Punica granatum HOM05D000135 ORTHO05D000816 5.1e-15 85.5 116 45.7
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 6.7e-15 85.1 94 53.2
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 4.3e-14 82.4 88 52.3
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.7e-13 79.3 89 47.2
Aqoxy5G00935 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 6.2e-13 78.6 107 46.7
COL.COLO4_12261 Corchorus olitorius HOM05D000135 ORTHO05D000816 8.2e-13 78.2 94 47.9
PSO170G5965 Papaver somniferum HOM05D031213 ORTHO05D000816 1.1e-12 77.8 84 51.2
PSO170G5225 Papaver somniferum HOM05D031213 ORTHO05D000816 2.4e-12 76.6 103 52.4
Lj2C97T3 Lonicera japonica HOM05D000135 ORTHO05D000816 3.1e-12 76.3 83 51.8
CiPaw.06G007300 Carya illinoinensis HOM05D000135 ORTHO05D000816 4.1e-12 75.9 50 70.0
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 4.1e-12 75.9 98 45.9
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 4.1e-12 75.9 85 49.4
CANSAT25G2687 Cannabis sativa HOM05D000135 ORTHO05D000816 5.3e-12 75.5 47 72.3
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 6.9e-12 75.1 58 62.1
Lj2C97T4 Lonicera japonica HOM05D000135 ORTHO05D000816 6.9e-12 75.1 90 51.1
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 6.9e-12 75.1 87 48.3
CAN.G742.23 Capsicum annuum HOM05D000135 ORTHO05D000816 9.0e-12 74.7 92 46.7
Manes.05G113200 Manihot esculenta HOM05D000135 ORTHO05D000816 1.5e-11 73.9 49 71.4
PSO017G1231 Papaver somniferum HOM05D000135 ORTHO05D000816 2.0e-11 73.6 104 50.0
Atru.chr13.16 Acer truncatum HOM05D000135 ORTHO05D000816 2.6e-11 73.2 84 47.6
PSO017G0388 Papaver somniferum HOM05D031213 ORTHO05D000816 2.6e-11 73.2 82 52.4
CiPaw.06G007400 Carya illinoinensis HOM05D000135 ORTHO05D000816 3.4e-11 72.8 55 67.3
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 4.5e-11 72.4 99 43.4
PSO017G5575 Papaver somniferum HOM05D031213 ORTHO05D000816 4.5e-11 72.4 77 51.9
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 5.8e-11 72.0 94 45.7
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 7.6e-11 71.6 95 46.3
Lj2C97T5 Lonicera japonica HOM05D000135 ORTHO05D000816 1.0e-10 71.2 81 49.4
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 1.3e-10 70.9 98 43.9
Sc09g0007590 Simmondsia chinensis HOM05D000135 ORTHO05D000816 1.7e-10 70.5 70 54.3
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 3.8e-10 69.3 96 50.0
BcaC04g21998 Brassica carinata HOM05D000135 ORTHO05D000816 6.5e-10 68.6 88 46.6
C09p25010 Brassica napus HOM05D000135 ORTHO05D000816 6.5e-10 68.6 88 46.6
BolC9t55394H Brassica oleracea HOM05D000135 ORTHO05D000816 6.5e-10 68.6 88 46.6
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 6.5e-10 68.6 48 64.6
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.1e-09 67.8 67 52.2
Oeu000733.1 Olea europaea HOM05D000135 ORTHO05D000816 1.4e-09 67.4 83 48.2
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.9e-09 67.0 51 58.8
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.9e-09 67.0 51 58.8
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 3.2e-09 66.2 46 63.0
BcaB07g31080 Brassica carinata HOM05D000135 ORTHO05D000816 4.2e-09 65.9 90 45.6
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 4.2e-09 65.9 46 63.0
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 4.2e-09 65.9 51 56.9
BraA09t37576Z Brassica rapa HOM05D000135 ORTHO05D000816 5.5e-09 65.5 88 45.5
Ciclev10002523m.g Citrus clementina HOM05D000135 ORTHO05D000816 5.5e-09 65.5 98 44.9
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 9.3e-09 64.7 50 58.0
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 1.6e-08 63.9 47 59.6
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 1.6e-08 63.9 42 66.7
HPP92_020093 Vanilla planifolia HOM05D000135 ORTHO05D428340 1.6e-08 63.9 82 45.1
A09p19650 Brassica napus HOM05D000135 ORTHO05D000816 2.1e-08 63.5 88 44.3
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 2.7e-08 63.2 63 52.4
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 2.7e-08 63.2 51 54.9
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 4.6e-08 62.4 46 58.7
THA.LOC104801644 Tarenaya hassleriana HOM05D000135 ORTHO05D000816 4.6e-08 62.4 98 43.9
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 4.6e-08 62.4 50 58.0
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 6.1e-08 62.0 51 58.8
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 6.1e-08 62.0 50 58.0
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 7.9e-08 61.6 46 58.7
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 1.0e-07 61.2 47 61.7
Nn6g31542 Nelumbo nucifera HOM05D000135 ORTHO05D000816 1.0e-07 61.2 67 53.7
HPP92_020094 Vanilla planifolia HOM05D000135 ORTHO05D000816 1.0e-07 61.2 85 48.2
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 1.3e-07 60.8 46 58.7
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.3e-07 60.8 94 38.3
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 1.3e-07 60.8 99 35.4
EL10Ac2g03275 Beta vulgaris HOM05D000135 ORTHO05D000816 1.8e-07 60.5 53 52.8
Thhalv10003430m.g Eutrema salsugineum HOM05D000135 ORTHO05D000816 1.8e-07 60.5 88 43.2
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 1.8e-07 60.5 52 55.8
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 1.8e-07 60.5 52 55.8
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 1.8e-07 60.5 46 54.3
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.8e-07 60.5 100 35.0
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 2.3e-07 60.1 48 58.3
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 2.3e-07 60.1 52 53.8
AL8G19120 Arabidopsis lyrata HOM05D000135 ORTHO05D000816 3.0e-07 59.7 89 41.6
AT5G42380 Arabidopsis thaliana HOM05D000135 ORTHO05D000816 3.0e-07 59.7 89 40.4
Carub.0008s0678 Capsella rubella HOM05D000135 ORTHO05D000816 3.0e-07 59.7 89 41.6
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 3.0e-07 59.7 52 55.8
MBI02_g10682_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 3.9e-07 59.3 68 47.1
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 3.9e-07 59.3 48 54.2
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 3.9e-07 59.3 47 55.3
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 3.9e-07 59.3 48 54.2
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 3.9e-07 59.3 48 54.2
DCAR_009849 Daucus carota HOM05D000135 ORTHO05D000816 5.1e-07 58.9 84 41.7
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 6.7e-07 58.5 43 55.8
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 6.7e-07 58.5 42 59.5
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 6.7e-07 58.5 42 59.5
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 6.7e-07 58.5 48 62.5
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 6.7e-07 58.5 47 57.4
BcaNung05248 Brassica carinata HOM05D000135 ORTHO05D000816 8.7e-07 58.2 76 47.4
CsaV3_1G000650 Cucumis sativus L. HOM05D000135 ORTHO05D000816 8.7e-07 58.2 66 53.0
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 1.5e-06 57.4 51 51.0
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.5e-06 57.4 46 54.3
THA.LOC104806864 Tarenaya hassleriana HOM05D000135 ORTHO05D000816 1.5e-06 57.4 97 41.2
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 1.9e-06 57.0 47 57.4
A07p42320 Brassica napus HOM05D000135 ORTHO05D000816 2.5e-06 56.6 92 41.3
DCAR_013352 Daucus carota HOM05D000135 ORTHO05D000816 2.5e-06 56.6 103 39.8
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 2.5e-06 56.6 43 55.8
GSVIVG01010383001 Vitis vinifera HOM05D000135 ORTHO05D000816 2.5e-06 56.6 47 53.2
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 3.3e-06 56.2 47 51.1
MELO3C026214.2 Cucumis melo HOM05D000135 ORTHO05D000816 3.3e-06 56.2 52 53.8
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 3.3e-06 56.2 47 55.3
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.3e-06 56.2 47 55.3
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 3.3e-06 56.2 47 57.4
MBI01_g44779_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 3.3e-06 56.2 68 45.6
BcaC08g47225 Brassica carinata HOM05D000135 ORTHO05D000816 4.3e-06 55.8 88 42.0
C06p50890 Brassica napus HOM05D000135 ORTHO05D000816 4.3e-06 55.8 88 42.0
BolC6t40115H Brassica oleracea HOM05D000135 ORTHO05D000816 4.3e-06 55.8 88 42.0
GSVIVG01010385001 Vitis vinifera HOM05D000135 ORTHO05D000816 4.3e-06 55.8 49 49.0
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 5.7e-06 55.5 46 52.2
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 5.7e-06 55.5 46 54.3
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 5.7e-06 55.5 46 52.2
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 5.7e-06 55.5 49 51.0
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 5.7e-06 55.5 43 60.5
Sp5g31810 Schrenkiella parvula HOM05D000135 ORTHO05D000816 5.7e-06 55.5 84 40.5
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 5.7e-06 55.5 46 56.5
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 7.4e-06 55.1 53 50.9
Dinv33354 Davidia involucrata HOM05D000135 ORTHO05D000816 7.4e-06 55.1 52 51.9
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 7.4e-06 55.1 43 60.5
MBI04_g28566_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 7.4e-06 55.1 81 44.4
BraA07t31760Z Brassica rapa HOM05D000135 ORTHO05D000816 9.7e-06 54.7 90 41.1
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 9.7e-06 54.7 42 54.8
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 9.7e-06 54.7 46 56.5


User provided reference genes

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