Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 8.2e-99 363.6 170 100.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 8.5e-88 327.0 223 74.0
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 8.3e-59 230.7 188 64.4
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 1.8e-58 229.6 189 64.6
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 5.4e-58 228.0 184 65.2
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.5e-47 193.4 192 55.2
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.5e-47 193.4 178 56.2
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 4.3e-47 191.8 132 67.4
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 4.3e-47 191.8 185 56.8
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 5.6e-47 191.4 188 54.3
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 1.2e-46 190.3 219 50.7
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.2e-46 190.3 185 54.6
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.2e-46 190.3 188 55.9
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.1e-46 189.5 194 54.1
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 2.1e-46 189.5 186 52.7
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 4.7e-46 188.3 194 53.1
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 6.2e-46 188.0 187 54.5
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 8.0e-46 187.6 192 54.2
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 8.0e-46 187.6 186 53.8
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.4e-45 186.8 185 54.1
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 3.1e-45 185.7 185 54.1
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 6.8e-45 184.5 187 53.5
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.8e-45 184.5 187 53.5
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 8.9e-45 184.1 184 50.5
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 8.9e-45 184.1 184 53.3
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 2.0e-44 183.0 186 52.7
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.6e-44 182.6 174 55.7
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.6e-44 182.6 205 50.2
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 5.8e-44 181.4 175 52.0
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 7.5e-44 181.0 175 51.4
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 9.8e-44 180.6 176 51.7
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.7e-43 179.9 170 52.9
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 4.9e-43 178.3 185 52.4
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 4.9e-43 178.3 168 56.0
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 6.4e-43 177.9 175 51.4
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 6.4e-43 177.9 186 52.2
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 3.2e-42 175.6 144 61.8
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 4.1e-42 175.3 182 48.4
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 5.4e-42 174.9 187 51.3
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 5.4e-42 174.9 186 52.2
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 9.2e-42 174.1 188 50.5
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.2e-41 173.7 185 50.8
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 1.2e-41 173.7 180 51.1
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.6e-41 173.3 183 50.8
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.6e-41 173.3 184 50.0
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 2.0e-41 172.9 185 50.3
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 2.7e-41 172.6 186 51.6
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 3.5e-41 172.2 181 50.8
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 3.5e-41 172.2 179 51.4
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 3.5e-41 172.2 186 51.6
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.0e-41 171.4 181 47.0
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 6.0e-41 171.4 186 51.1
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.0e-40 170.6 184 48.9
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.0e-40 170.6 184 48.9
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.0e-40 170.6 182 48.9
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.0e-40 170.6 184 49.5
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 1.3e-40 170.2 180 50.6
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.7e-40 169.9 165 53.3
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.7e-40 169.9 184 48.9
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.3e-40 169.5 147 57.8
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 3.0e-40 169.1 182 48.4
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 5.0e-40 168.3 169 51.5
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 5.0e-40 168.3 169 51.5
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 5.0e-40 168.3 164 52.4
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 8.6e-40 167.5 188 51.1
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.5e-39 166.8 185 50.3
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.5e-39 166.8 233 45.1
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 1.5e-39 166.8 145 53.8
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.9e-39 166.4 191 48.2
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.5e-39 166.0 182 51.1
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.5e-39 166.0 182 50.5
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 2.5e-39 166.0 147 56.5
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 5.6e-39 164.9 178 51.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.2e-38 163.7 146 54.1
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.2e-38 163.7 192 45.3
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 8.1e-38 161.0 146 53.4
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 8.1e-38 161.0 184 47.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.1e-37 160.6 185 48.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.3e-37 159.5 144 53.5
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 2.3e-37 159.5 184 46.2
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.3e-37 159.5 156 48.7
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.5e-36 156.8 151 51.7
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 2.6e-36 156.0 156 49.4
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 2.6e-36 156.0 156 49.4
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.4e-36 155.6 143 51.0
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 7.5e-36 154.5 144 50.7
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 9.8e-36 154.1 131 57.3
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.3e-35 153.7 152 48.0
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.1e-34 150.6 144 50.7
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.9e-34 149.8 160 51.2
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 3.2e-34 149.1 133 55.6
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.6e-33 146.7 162 51.2
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.1e-33 146.4 71 83.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.1e-33 146.4 142 47.9
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 7.8e-33 144.4 142 49.3
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.8e-33 144.4 72 83.3
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.3e-32 142.9 72 83.3
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.9e-32 142.1 168 42.3
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.9e-32 142.1 140 47.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.5e-31 140.2 72 80.6
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.1e-30 136.3 134 54.5
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.1e-30 136.3 68 82.4
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 8.1e-30 134.4 167 46.1
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 3.1e-29 132.5 174 43.7
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.5e-28 130.2 169 44.4
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 3.4e-28 129.0 72 79.2
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 2.2e-27 126.3 172 42.4
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.2e-27 126.3 140 42.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 3.8e-27 125.6 132 50.8
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 4.9e-27 125.2 160 42.5
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 8.4e-27 124.4 124 51.6
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.9e-26 123.2 150 48.7
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 3.5e-25 119.0 59 84.7
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 4.7e-22 108.6 72 63.9
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 6.2e-22 108.2 148 43.9
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-20 103.6 53 84.9
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 2.2e-19 99.8 137 36.5
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.1e-18 97.4 161 36.0
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.9e-18 96.7 159 32.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.9e-18 96.7 153 36.6
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 6.0e-17 91.7 136 33.8
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.0e-16 89.4 137 35.0
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 6.6e-16 88.2 117 40.2
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.3e-15 85.9 71 52.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 5.6e-15 85.1 65 55.4
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 4.8e-14 82.0 70 61.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.4e-10 70.5 86 53.5
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.9e-10 70.1 39 76.9
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.7e-06 55.8 25 92.0
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 8.1e-06 54.7 59 45.8


User provided reference genes

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