Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1802.3 871 100.0
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1484.9 887 84.3
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1375.5 888 76.8
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1360.1 886 76.4
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1292.7 888 72.1
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1266.5 888 69.9
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1254.2 889 70.1
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1253.0 889 70.3
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1250.0 888 70.2
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1242.3 883 69.5
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1233.8 887 68.5
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1228.4 889 69.5
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1225.7 888 68.5
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1220.3 886 68.3
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1217.2 891 68.2
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1216.8 917 66.6
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1215.7 872 69.2
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1206.4 889 67.7
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1199.9 905 66.1
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1199.1 889 66.4
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1196.8 897 67.3
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1196.4 886 67.4
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1194.1 902 67.3
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1191.4 925 64.3
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1190.3 888 66.3
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1184.9 885 66.7
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1181.4 888 66.1
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1181.4 888 65.7
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1163.7 917 64.3
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1162.9 888 66.1
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1161.4 888 66.1
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1154.4 888 65.5
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1151.0 886 64.0
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1149.0 882 64.6
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1145.6 887 62.7
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1145.6 888 63.7
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1144.8 888 63.3
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1141.3 883 64.6
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1137.1 888 65.3
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1137.1 883 64.2
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1134.4 873 64.4
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1130.9 885 62.3
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1129.0 882 63.4
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1128.2 887 64.3
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1123.2 889 63.1
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1117.1 889 62.3
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1117.1 854 64.9
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1115.1 938 60.4
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1114.4 888 62.8
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1109.0 899 61.1
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1108.2 890 62.4
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1107.0 840 65.2
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1106.3 921 59.8
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1104.7 890 62.8
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1104.0 891 62.6
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1104.0 891 62.6
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1097.8 885 62.7
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1097.4 882 62.6
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1097.4 889 62.1
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1094.7 886 62.2
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1092.8 892 60.3
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1086.6 892 60.0
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1085.1 889 62.0
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1079.3 888 60.1
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1078.9 931 58.0
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 4.2e-311 1071.2 872 59.7
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 8.9e-311 1070.1 888 60.5
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 6.5e-309 1063.9 878 62.1
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 8.5e-309 1063.5 891 60.7
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 1.6e-307 1059.3 890 60.4
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 3.3e-305 1051.6 892 59.4
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 4.4e-305 1051.2 872 60.9
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 8.2e-304 1047.0 891 59.0
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 2.5e-300 1035.4 892 58.6
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 7.2e-300 1033.9 892 58.9
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 1.2e-297 1026.5 889 59.2
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 9.7e-297 1023.5 889 59.3
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 1.5e-292 1009.6 874 58.4
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 2.1e-291 1005.7 932 56.4
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 1.5e-289 999.6 940 56.1
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 2.6e-289 998.8 800 64.0
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 2.9e-285 985.3 887 55.4
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 5.5e-284 981.1 877 58.0
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 5.5e-284 981.1 886 55.1
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 3.6e-283 978.4 812 61.8
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 2.2e-280 969.1 888 53.9
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 2.0e-273 946.0 795 62.0
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 2.3e-253 879.4 694 64.4
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.4e-242 843.6 680 63.1
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.5e-241 840.1 684 63.3
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.2e-232 809.7 886 48.5
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 8.2e-219 764.6 691 58.8
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 5.1e-213 745.3 697 53.4
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 4.1e-202 709.1 908 43.1
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 7.7e-193 678.3 911 43.0
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 9.4e-183 644.8 912 40.5
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 1.4e-181 641.0 461 68.5
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.2e-175 619.4 458 66.8
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 3.4e-164 583.2 597 51.3
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.0e-140 504.2 458 54.6
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.5e-135 488.0 421 65.6
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 1.5e-135 488.0 668 41.3
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 3.1e-133 480.3 454 57.3
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.0e-124 451.1 482 52.3
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 1.0e-120 438.7 298 68.1
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 1.6e-113 414.8 528 43.6
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 9.6e-111 405.6 550 42.4
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 7.4e-95 352.8 193 78.8
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.3e-80 304.7 262 57.6
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 1.9e-74 285.0 496 36.9
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.0e-72 279.3 388 45.4
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 3.3e-71 274.2 146 81.5
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 1.8e-69 268.5 149 81.2
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 1.6e-65 255.4 317 49.8
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 4.0e-56 224.2 123 76.4
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 8.3e-54 216.5 195 50.3
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 7.3e-50 203.4 147 59.2
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.6e-44 184.1 226 47.3
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.0e-39 168.7 93 76.3
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 1.1e-37 162.9 908 23.8
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 4.4e-31 141.0 92 67.4
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 4.4e-23 114.4 54 87.0
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.8e-22 111.3 196 37.2
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 2.2e-14 85.5 80 47.5
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 6.2e-09 67.4 154 35.1
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 1.8e-08 65.9 52 57.7
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 1.2e-07 63.2 164 31.1
Os06g0251200 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.8e-07 60.8 148 30.4
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 1.3e-06 59.7 154 28.6
Hma1.2p1_0026F.1_g016300 Hydrangea macrophylla HOM05D000563 ORTHO05D000536 1.7e-06 59.3 170 31.2
Zm00001eb174850 Zea mays HOM05D000563 ORTHO05D000536 1.7e-06 59.3 140 27.1
Migut.F00745 Erythranthe guttata HOM05D000563 ORTHO05D000536 2.9e-06 58.5 177 31.1
BcaNung02495 Brassica carinata HOM05D001631 ORTHO05D018599 3.8e-06 58.2 95 37.9
PSO384G4100 Papaver somniferum HOM05D000563 ORTHO05D000536 4.9e-06 57.8 163 30.1


User provided reference genes

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