Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 6.5e-60 233.8 113 100.0
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.7e-47 192.6 96 94.8
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.2e-37 159.8 101 75.2
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.6e-37 159.5 111 66.7
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 4.5e-37 157.9 114 64.0
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 3.8e-36 154.8 111 65.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 6.5e-36 154.1 99 73.7
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 6.5e-36 154.1 112 66.1
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.9e-35 152.5 112 64.3
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 3.2e-35 151.8 111 64.0
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 4.2e-35 151.4 111 61.3
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 4.2e-35 151.4 111 61.3
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 7.2e-35 150.6 112 63.4
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.2e-34 149.8 112 65.2
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.2e-34 149.8 111 64.0
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.2e-34 149.8 111 61.3
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.8e-34 148.7 113 61.1
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 4.7e-34 147.9 108 61.1
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 8.0e-34 147.1 109 63.3
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 8.0e-34 147.1 111 62.2
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.0e-33 146.7 111 62.2
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.4e-33 146.4 112 62.5
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.4e-33 146.4 111 63.1
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 5.2e-33 144.4 111 57.7
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.5e-32 142.9 108 60.2
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 4.4e-32 141.4 109 59.6
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 5.7e-32 141.0 107 59.8
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.7e-32 141.0 111 57.7
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 7.5e-32 140.6 112 58.9
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 9.8e-32 140.2 111 56.8
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 3.7e-31 138.3 112 58.0
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 3.7e-31 138.3 103 63.1
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.9e-31 137.9 111 57.7
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 6.3e-31 137.5 105 61.0
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.4e-30 136.3 95 64.2
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-30 136.3 111 60.4
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.8e-30 136.0 95 63.2
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 3.1e-30 135.2 95 66.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 3.1e-30 135.2 107 58.9
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 4.1e-30 134.8 94 64.9
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 4.1e-30 134.8 108 59.3
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 4.1e-30 134.8 111 55.9
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.4e-30 134.4 111 58.6
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 5.4e-30 134.4 95 64.2
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.2e-30 133.7 109 57.8
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.2e-30 133.7 109 57.8
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 9.2e-30 133.7 96 63.5
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.2e-29 133.3 95 64.2
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.2e-29 133.3 112 56.2
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.2e-29 133.3 112 53.6
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.7e-29 132.1 111 58.6
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 2.7e-29 132.1 95 64.2
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 3.5e-29 131.7 111 56.8
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 4.5e-29 131.3 111 55.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 5.9e-29 131.0 96 61.5
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 1.3e-28 129.8 96 63.5
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.7e-28 129.4 95 61.1
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.3e-28 129.0 112 56.2
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.3e-28 129.0 95 62.1
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.3e-28 129.0 100 62.0
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.9e-28 128.6 100 60.0
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.9e-28 128.6 99 58.6
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.9e-28 128.6 99 58.6
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 3.8e-28 128.3 111 53.2
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 5.0e-28 127.9 100 58.0
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.6e-28 127.5 104 56.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 6.6e-28 127.5 98 60.2
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 6.6e-28 127.5 95 62.1
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 6.6e-28 127.5 112 56.2
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 6.6e-28 127.5 97 60.8
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 8.6e-28 127.1 105 58.1
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 8.6e-28 127.1 111 53.2
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-27 126.7 95 60.0
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-27 126.7 95 60.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.5e-27 126.3 112 56.2
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.5e-27 126.3 111 54.1
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.5e-27 126.3 101 58.4
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.9e-27 125.9 100 61.0
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.9e-27 125.9 95 58.9
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.5e-27 125.6 104 55.8
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 2.5e-27 125.6 100 55.0
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 3.3e-27 125.2 104 55.8
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.3e-27 125.2 100 56.0
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 4.3e-27 124.8 94 61.7
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.3e-27 124.8 95 56.8
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 4.3e-27 124.8 95 60.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 5.6e-27 124.4 95 57.9
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 7.3e-27 124.0 100 58.0
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.3e-27 124.0 95 60.0
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 9.5e-27 123.6 112 55.4
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 9.5e-27 123.6 96 59.4
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 9.5e-27 123.6 95 57.9
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.1e-26 122.5 100 55.0
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.8e-26 122.1 96 61.5
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 8.0e-26 120.6 98 58.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 8.0e-26 120.6 110 52.7
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.0e-25 120.2 96 59.4
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.0e-25 120.2 112 58.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.0e-25 120.2 96 61.5
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.0e-25 120.2 96 59.4
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.4e-25 119.8 96 55.2
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 3.0e-25 118.6 108 50.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.2e-25 117.9 95 55.8
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 5.2e-25 117.9 98 57.1
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 5.2e-25 117.9 103 56.3
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 6.8e-25 117.5 98 56.1
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.9e-25 117.1 98 56.1
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 8.9e-25 117.1 98 57.1
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 8.9e-25 117.1 95 58.9
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 1.5e-24 116.3 95 56.8
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-24 115.9 110 50.9
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 2.0e-24 115.9 99 51.5
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-24 115.5 110 50.9
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 2.6e-24 115.5 110 50.9
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.6e-24 115.5 110 50.9
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 3.4e-24 115.2 95 56.8
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 4.4e-24 114.8 95 54.7
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 5.7e-24 114.4 98 56.1
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 7.5e-24 114.0 96 53.1
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.3e-23 113.2 103 53.4
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 2.9e-23 112.1 98 53.1
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 2.9e-23 112.1 110 48.2
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 3.7e-23 111.7 95 56.8
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.7e-23 111.7 95 53.7
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 4.9e-23 111.3 96 54.2
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 8.3e-23 110.5 96 53.1
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-22 110.2 95 53.7
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.4e-22 109.8 101 53.5
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.8e-22 109.4 95 55.8
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.8e-22 109.4 95 55.8
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 5.4e-22 107.8 95 52.6
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 9.2e-22 107.1 95 51.6
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 9.2e-22 107.1 97 48.5
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.2e-21 106.7 94 53.2
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.7e-21 105.5 109 47.7
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.5e-21 105.1 95 51.6
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.9e-21 104.4 88 52.3
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 3.0e-20 102.1 103 46.6
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.6e-20 100.5 119 46.2
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.1e-19 100.1 114 47.4
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.5e-19 99.8 99 49.5
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 3.3e-19 98.6 82 56.1
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 4.3e-19 98.2 113 46.9
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 4.3e-19 98.2 113 46.9
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 5.6e-19 97.8 88 53.4
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-18 95.9 88 52.3
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 6.2e-18 94.4 88 51.1
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 6.2e-18 94.4 98 45.9
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.2e-18 94.4 95 47.4
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 8.0e-18 94.0 85 51.8
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.1e-17 93.6 95 47.4
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 4.0e-17 91.7 95 46.3
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 5.2e-17 91.3 95 46.3
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 4.4e-16 88.2 95 49.5
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 8.3e-15 84.0 75 52.0
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-14 82.4 61 62.3
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.9e-11 72.8 57 61.4
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.5e-11 72.4 55 63.6
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 5.6e-11 71.2 102 38.2
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.2e-08 63.5 55 54.5
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.5e-08 63.2 95 33.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 3.7e-07 58.5 106 34.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.1e-06 57.0 55 47.3
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 7.1e-06 54.3 57 43.9


User provided reference genes

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