Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 5.2e-81 304.3 150 100.0
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 6.4e-39 164.5 90 91.1
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.1e-38 163.7 90 90.0
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.6e-34 149.8 90 78.9
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.6e-34 149.8 89 80.9
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.1e-34 149.4 90 80.0
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.1e-34 149.4 90 78.9
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 8.1e-34 147.5 89 77.5
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.4e-33 146.0 88 80.7
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 2.4e-33 146.0 90 78.9
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.4e-33 146.0 90 77.8
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.4e-33 146.0 90 77.8
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 2.4e-33 146.0 90 75.6
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 5.3e-33 144.8 90 77.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 5.3e-33 144.8 90 77.8
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 5.3e-33 144.8 90 75.6
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 9.0e-33 144.1 90 77.8
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.5e-32 143.3 89 75.3
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.0e-32 142.9 90 76.7
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 2.0e-32 142.9 90 76.7
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.0e-32 142.9 90 77.8
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.6e-32 142.5 90 73.3
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.6e-32 142.5 88 76.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.6e-32 142.5 90 75.6
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.4e-32 142.1 91 72.5
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.5e-32 141.7 124 59.7
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 7.6e-32 141.0 88 75.0
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 7.6e-32 141.0 88 75.0
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 9.9e-32 140.6 91 73.6
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 9.9e-32 140.6 90 74.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 9.9e-32 140.6 89 71.9
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.3e-31 140.2 89 74.2
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.3e-31 140.2 90 74.4
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.3e-31 140.2 90 72.2
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.3e-31 140.2 90 74.4
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-31 140.2 90 74.4
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-31 140.2 90 74.4
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-31 140.2 90 74.4
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.3e-31 140.2 90 76.7
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.3e-31 140.2 89 70.8
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.3e-31 140.2 89 73.0
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.3e-31 140.2 88 75.0
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.3e-31 140.2 88 77.3
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.7e-31 139.8 88 77.3
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.7e-31 139.8 90 72.2
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.2e-31 139.4 90 74.4
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 2.2e-31 139.4 90 74.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 2.2e-31 139.4 90 75.6
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 2.2e-31 139.4 91 74.7
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.2e-31 139.4 90 72.2
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.8e-31 138.7 89 71.9
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.8e-31 138.7 89 71.9
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 3.8e-31 138.7 112 60.7
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 3.8e-31 138.7 112 59.8
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 3.8e-31 138.7 112 59.8
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 3.8e-31 138.7 112 59.8
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.8e-31 138.7 89 73.0
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.8e-31 138.7 88 73.9
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 4.9e-31 138.3 100 66.0
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 4.9e-31 138.3 88 72.7
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 6.4e-31 137.9 90 74.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 8.4e-31 137.5 89 69.7
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 8.4e-31 137.5 89 69.7
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 8.4e-31 137.5 88 75.0
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 8.4e-31 137.5 91 73.6
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 8.4e-31 137.5 130 56.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.1e-30 137.1 112 60.7
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.1e-30 137.1 89 70.8
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.4e-30 136.7 114 61.4
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.4e-30 136.7 89 73.0
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.9e-30 136.3 90 75.6
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.9e-30 136.3 88 73.9
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 2.4e-30 136.0 90 70.0
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.4e-30 136.0 86 75.6
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 2.4e-30 136.0 90 72.2
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.2e-30 135.6 112 59.8
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.2e-30 135.6 89 69.7
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 3.2e-30 135.6 90 74.4
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 3.2e-30 135.6 91 74.7
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 7.1e-30 134.4 90 72.2
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 7.1e-30 134.4 90 71.1
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 9.3e-30 134.0 90 70.0
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.2e-29 133.7 90 70.0
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.2e-29 133.7 88 70.5
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.2e-29 133.7 89 71.9
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.6e-29 133.3 90 68.9
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 2.1e-29 132.9 90 68.9
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 2.7e-29 132.5 86 72.1
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 2.7e-29 132.5 89 69.7
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 4.6e-29 131.7 91 65.9
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 4.6e-29 131.7 90 68.9
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.0e-28 130.6 91 68.1
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.3e-28 130.2 91 67.0
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.3e-28 130.2 90 67.8
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.8e-28 129.8 88 70.5
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 2.3e-28 129.4 90 70.0
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 2.3e-28 129.4 90 67.8
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 6.7e-28 127.9 89 67.4
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 8.7e-28 127.5 87 71.3
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.1e-27 127.1 89 70.8
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.1e-27 127.1 101 60.4
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.5e-27 126.7 89 66.3
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.5e-27 126.7 88 69.3
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.9e-27 126.3 89 66.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.3e-27 125.6 89 64.0
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 4.3e-27 125.2 89 65.2
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 4.3e-27 125.2 89 65.2
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 4.3e-27 125.2 89 65.2
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 4.3e-27 125.2 89 65.2
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 4.3e-27 125.2 89 65.2
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.6e-26 123.2 88 69.3
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.8e-26 122.5 89 62.9
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 2.8e-26 122.5 87 70.1
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 3.7e-26 122.1 89 64.0
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 4.8e-26 121.7 117 55.6
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 4.8e-26 121.7 117 55.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.2e-26 121.3 89 65.2
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.4e-25 119.4 88 65.9
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 2.0e-24 116.3 88 62.5
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.6e-24 115.9 87 57.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.8e-23 112.1 80 62.5
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 8.4e-23 110.9 70 77.1
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 5.5e-22 108.2 88 62.5
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.1e-21 106.3 148 44.6
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.0e-20 104.0 82 65.9
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.0e-20 104.0 82 65.9
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 5.1e-20 101.7 88 53.4
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.9e-19 99.8 88 54.5
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 9.7e-19 97.4 75 62.7
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.6e-18 96.7 63 74.6
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 2.8e-18 95.9 64 73.4
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 8.2e-18 94.4 84 58.3
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.8e-17 93.2 61 68.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-17 92.4 61 70.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 6.9e-17 91.3 60 68.3
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.4e-16 89.0 98 50.0
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 6.5e-15 84.7 55 74.5
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 8.5e-15 84.3 88 47.7
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.9e-14 83.2 60 63.3
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 7.2e-14 81.3 88 52.3
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 9.3e-14 80.9 88 52.3
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 3.6e-13 79.0 95 45.3
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.9e-13 77.8 89 49.4
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.9e-11 73.2 44 72.7
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.7e-10 68.9 49 65.3
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.7e-10 68.9 47 66.0
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.7e-10 68.9 47 66.0
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 9.1e-09 64.3 60 46.7
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 4.5e-08 62.0 88 37.5
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 9.4e-06 54.3 28 85.7


User provided reference genes

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