Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 3.8e-137 491.5 247 100.0
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.3e-97 360.1 202 88.6
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.7e-92 343.2 193 88.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.8e-83 313.2 196 78.1
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 3.5e-82 308.9 196 77.6
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.3e-81 306.2 196 77.6
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 6.6e-81 304.7 196 75.5
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.6e-81 304.3 193 75.1
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 8.6e-81 304.3 193 75.1
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-80 303.9 196 73.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-80 303.1 202 76.2
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-80 303.1 196 75.5
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.5e-80 302.8 196 73.5
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.6e-79 300.1 196 75.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 3.6e-79 298.9 196 73.5
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 8.0e-79 297.7 196 71.9
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.7e-77 291.6 194 72.2
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.9e-76 289.3 192 71.9
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 8.3e-76 287.7 196 72.4
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.1e-75 287.3 192 71.4
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.1e-75 287.3 192 71.4
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.1e-75 287.3 196 71.4
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.4e-75 287.0 202 67.8
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.8e-75 286.6 202 67.3
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 2.4e-75 286.2 196 69.9
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 3.2e-75 285.8 191 73.3
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 3.2e-75 285.8 193 70.5
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 7.0e-75 284.6 196 69.4
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.2e-74 283.9 196 71.4
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.2e-74 283.9 195 69.2
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 2.0e-74 283.1 195 68.2
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.7e-74 282.7 192 69.8
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.7e-74 282.7 202 67.8
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 3.5e-74 282.3 189 72.0
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 3.5e-74 282.3 196 68.9
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.9e-74 281.6 189 71.4
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 7.8e-74 281.2 195 68.2
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 7.8e-74 281.2 196 67.9
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.0e-73 280.8 196 69.9
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.3e-73 280.4 192 69.3
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.9e-73 279.3 189 70.9
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 2.9e-73 279.3 196 68.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.9e-73 278.9 196 70.4
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 5.0e-73 278.5 188 70.2
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 6.6e-73 278.1 196 67.3
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 8.6e-73 277.7 197 69.0
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.5e-72 276.2 202 67.3
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 4.3e-72 275.4 194 67.0
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 4.3e-72 275.4 195 67.2
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 5.6e-72 275.0 189 68.8
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 7.3e-72 274.6 225 61.3
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 9.5e-72 274.2 197 68.0
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 9.5e-72 274.2 193 67.4
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 9.5e-72 274.2 195 66.7
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.1e-71 273.1 193 68.9
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 2.1e-71 273.1 195 66.7
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.8e-71 272.7 193 67.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 2.8e-71 272.7 195 67.2
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 6.1e-71 271.6 196 66.3
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.0e-70 270.8 196 65.3
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.0e-70 270.8 193 66.8
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.8e-70 270.0 196 66.3
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.8e-70 270.0 196 66.3
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.3e-70 269.6 198 66.2
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 5.2e-70 268.5 203 65.0
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 6.8e-70 268.1 196 65.3
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 8.9e-70 267.7 197 66.5
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 8.9e-70 267.7 194 66.0
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-69 267.3 202 65.3
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.0e-69 266.5 202 63.9
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.0e-69 266.5 202 63.4
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.6e-69 266.2 197 65.0
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.8e-69 265.0 192 64.1
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 5.8e-69 265.0 195 65.1
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 5.8e-69 265.0 195 65.1
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.7e-68 263.5 195 64.6
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.7e-68 263.5 192 63.5
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.2e-68 263.1 196 66.3
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.7e-68 262.3 202 64.9
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 3.7e-68 262.3 229 59.0
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.3e-68 261.2 192 63.5
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 8.3e-68 261.2 193 64.2
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 8.3e-68 261.2 192 63.5
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 8.3e-68 261.2 193 66.8
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.4e-67 260.4 196 66.8
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.9e-67 260.0 192 63.0
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 7.0e-67 258.1 196 62.2
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.5e-66 255.8 193 62.7
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 6.0e-66 255.0 192 61.5
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 6.0e-66 255.0 192 61.5
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.0e-65 254.2 197 63.5
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.0e-65 254.2 192 60.4
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.0e-65 254.2 192 62.5
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.3e-65 253.8 192 60.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 5.0e-65 251.9 192 60.4
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 5.0e-65 251.9 192 60.4
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 6.6e-65 251.5 198 58.6
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 6.6e-65 251.5 170 67.6
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 8.6e-65 251.1 198 58.6
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-64 250.8 192 59.4
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.5e-64 250.4 192 60.9
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.9e-64 250.0 190 61.1
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.9e-64 250.0 198 58.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.3e-64 249.2 197 62.4
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 5.6e-64 248.4 174 67.8
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 7.3e-64 248.1 195 62.6
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 9.5e-64 247.7 195 59.5
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 9.5e-64 247.7 190 61.6
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.6e-63 246.9 196 62.2
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.6e-63 245.7 194 59.8
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 8.1e-63 244.6 199 57.8
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 8.1e-63 244.6 199 57.8
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.1e-63 244.6 222 57.2
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.3e-62 243.0 199 57.3
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.3e-62 243.0 199 57.3
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.3e-62 243.0 199 57.3
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.3e-62 243.0 198 59.1
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.2e-62 241.9 161 70.8
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 3.4e-61 239.2 195 63.1
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.7e-60 235.7 160 68.1
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 4.9e-60 235.3 160 68.8
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 9.2e-59 231.1 197 57.4
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 9.2e-59 231.1 197 57.4
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-58 230.7 196 58.7
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 2.7e-58 229.6 194 62.4
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.3e-57 227.3 193 61.7
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 2.3e-57 226.5 196 59.2
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.3e-57 226.5 210 54.3
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 3.9e-57 225.7 161 65.8
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-56 224.2 195 55.9
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.5e-56 223.8 200 57.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.4e-53 212.6 185 54.6
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.9e-48 196.8 196 51.5
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.6e-47 193.7 173 58.4
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.3e-44 184.1 122 68.9
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.6e-42 177.2 122 69.7
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 3.0e-41 172.9 129 62.8
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 8.7e-41 171.4 185 47.0
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.8e-39 165.6 196 46.4
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.1e-38 164.5 116 69.0
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 6.9e-38 161.8 187 42.8
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-37 161.0 120 64.2
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 5.8e-37 158.7 191 42.4
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.3e-36 157.5 178 45.5
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 3.8e-36 156.0 119 63.0
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 6.4e-36 155.2 119 60.5
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 5.4e-35 152.1 122 53.3
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.9e-30 135.2 124 54.0
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 3.9e-25 119.4 148 41.2
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 4.8e-23 112.5 70 77.1
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 8.1e-23 111.7 74 71.6
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.4e-19 100.9 182 33.0
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 2.7e-18 96.7 62 71.0
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 8.7e-17 91.7 75 58.7
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.7e-16 89.0 81 55.6
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 6.9e-14 82.0 71 54.9
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 2.3e-09 67.0 60 63.3
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.1e-08 64.7 46 65.2
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.2e-07 60.5 46 63.0
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.2e-07 60.5 46 63.0


User provided reference genes

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