Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 2.5e-108 395.6 216 100.0
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 4.0e-98 361.7 217 89.4
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.8e-66 256.5 214 69.2
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 3.9e-61 238.8 208 69.2
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.2e-54 217.2 213 61.0
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 3.9e-53 212.2 217 60.4
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 6.2e-51 204.9 213 58.2
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 3.1e-50 202.6 215 60.0
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.7e-48 196.8 216 57.4
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.9e-48 195.3 194 58.2
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 5.6e-44 181.8 209 58.9
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 7.3e-44 181.4 203 59.1
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 9.6e-44 181.0 207 55.6
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.2e-43 180.6 208 59.1
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 1.4e-42 177.2 209 59.3
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 5.2e-42 175.3 216 55.6
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.5e-41 173.7 211 52.6
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.5e-41 173.7 211 52.6
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.0e-41 173.3 214 52.8
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.6e-41 172.9 218 53.7
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 3.4e-41 172.6 207 52.7
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.4e-40 168.3 194 52.6
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.9e-39 166.8 210 53.3
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.9e-39 166.8 216 56.5
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.2e-39 166.0 211 51.2
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 7.1e-39 164.9 194 53.1
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.7e-38 162.9 207 51.7
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 4.6e-38 162.2 223 46.6
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 4.6e-38 162.2 207 51.2
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.9e-36 156.8 236 49.2
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 4.3e-36 155.6 172 52.9
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.2e-35 151.8 190 48.9
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.1e-34 151.0 199 50.3
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.1e-34 151.0 199 53.8
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.4e-34 150.6 177 58.2
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 2.4e-34 149.8 204 51.0
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.0e-34 147.9 192 51.0
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.2e-33 147.5 206 51.9
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.2e-33 147.5 212 46.7
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.6e-33 146.4 190 51.6
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 3.4e-33 146.0 139 57.6
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 9.9e-33 144.4 138 59.4
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.3e-32 144.1 175 55.4
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.7e-32 143.7 201 48.8
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.2e-32 143.3 178 50.6
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 2.2e-32 143.3 195 51.8
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.9e-32 142.9 179 49.7
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 4.9e-32 142.1 235 45.1
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 6.4e-32 141.7 172 51.7
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.4e-32 141.7 174 51.1
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 2.4e-31 139.8 183 49.2
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 3.2e-31 139.4 205 48.3
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.7e-30 136.3 212 46.2
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.6e-30 135.6 230 46.1
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 4.6e-30 135.6 215 50.2
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 6.7e-29 131.7 206 46.6
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 6.7e-29 131.7 211 48.3
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 8.7e-29 131.3 209 45.0
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 8.7e-29 131.3 186 46.2
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.1e-28 131.0 197 47.2
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.5e-28 130.6 235 41.7
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.9e-28 130.2 173 46.8
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 5.6e-28 128.6 213 45.1
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.3e-27 127.5 155 49.0
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 1.3e-27 127.5 211 44.1
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 2.1e-27 126.7 190 46.3
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 3.6e-27 125.9 210 44.3
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 3.6e-27 125.9 186 49.5
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.6e-27 125.9 195 45.6
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 8.1e-27 124.8 214 42.1
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.8e-26 123.6 171 46.2
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 6.9e-26 121.7 219 43.4
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 6.9e-26 121.7 219 43.4
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 6.9e-26 121.7 219 43.4
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 2.0e-25 120.2 193 44.0
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.6e-25 119.8 203 44.8
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.4e-25 119.4 224 45.1
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 3.4e-25 119.4 197 43.1
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 3.4e-25 119.4 169 50.3
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 9.9e-25 117.9 222 43.7
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 9.9e-25 117.9 215 43.7
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 9.9e-25 117.9 224 38.4
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.3e-24 117.5 229 40.2
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.3e-24 117.5 220 40.9
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.3e-24 117.5 199 39.7
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.7e-24 117.1 176 47.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.7e-24 117.1 197 39.1
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 3.8e-24 115.9 222 42.3
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 3.8e-24 115.9 195 42.1
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 4.9e-24 115.5 183 44.8
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 4.9e-24 115.5 195 41.5
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 8.4e-24 114.8 220 40.5
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 8.4e-24 114.8 191 41.9
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.1e-23 114.4 220 41.8
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.1e-23 114.4 215 40.9
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.9e-23 113.6 214 39.3
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.9e-23 113.6 214 39.3
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.9e-23 113.6 216 39.4
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 2.4e-23 113.2 154 44.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 5.5e-23 112.1 216 40.3
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 7.1e-23 111.7 185 43.2
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 7.1e-23 111.7 192 43.2
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 9.3e-23 111.3 192 43.2
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.2e-22 110.9 203 39.4
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.2e-22 110.9 174 44.8
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 1.6e-22 110.5 222 43.7
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.7e-22 109.8 216 39.8
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.5e-22 109.4 224 40.6
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 6.0e-22 108.6 200 44.0
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.3e-21 106.7 150 41.3
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 3.9e-21 105.9 234 39.7
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 6.7e-21 105.1 218 40.4
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.1e-20 104.4 187 48.1
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.9e-20 103.6 202 40.1
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 5.6e-20 102.1 207 39.1
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 7.4e-20 101.7 208 39.4
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 7.4e-20 101.7 192 42.7
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.1e-19 100.1 173 41.0
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 8.1e-19 98.2 214 40.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.0e-18 95.9 197 38.6
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 6.9e-18 95.1 206 37.9
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 9.0e-18 94.7 199 40.2
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.2e-17 94.4 175 37.7
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.4e-17 92.8 209 38.3
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.3e-16 90.9 172 41.9
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.7e-16 90.5 219 34.2
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 2.9e-16 89.7 167 44.9
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.9e-16 89.0 184 42.9
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 6.5e-16 88.6 186 39.2
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.1e-15 87.8 184 42.9
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.9e-15 87.0 158 50.0
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 4.6e-14 82.4 219 32.9
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.0e-13 81.3 127 46.5
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 3.0e-13 79.7 153 35.9
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 8.7e-13 78.2 227 33.9
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.1e-12 77.8 222 36.0
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.1e-12 77.8 134 44.0
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 8.2e-11 71.6 124 44.4
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 9.0e-10 68.2 180 32.8
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 7.6e-09 65.1 132 40.2
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 2.9e-08 63.2 183 39.3
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 2.5e-07 60.1 52 57.7


User provided reference genes

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