Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 0.0e+00 1140.6 606 100.0
CiPaw.07G160500 Carya illinoinensis HOM05D003229 ORTHO05D017800 1.6e-43 181.8 394 38.3
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 9.9e-38 162.5 593 30.5
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 3.3e-25 120.9 444 27.3
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 8.1e-24 116.3 317 28.7
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 4.0e-23 114.0 151 40.4
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 9.9e-22 109.4 137 41.6
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 9.9e-22 109.4 145 42.1
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 2.4e-20 104.8 335 29.0
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 3.5e-19 100.9 140 39.3
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 7.9e-19 99.8 169 35.5
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.0e-18 99.4 157 37.6
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 2.3e-18 98.2 140 40.0
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 5.1e-18 97.1 140 39.3
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 1.5e-17 95.5 156 35.3
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 5.6e-17 93.6 156 35.9
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.4e-17 93.2 142 35.9
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 9.6e-17 92.8 142 35.9
Cfa012830 Carpinus fangiana HOM05D020764 ORTHO05D017800 2.1e-16 91.7 86 60.5
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 2.1e-16 91.7 130 38.5
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.8e-16 91.3 192 31.2
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 3.6e-16 90.9 120 41.7
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 3.6e-16 90.9 371 26.4
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 1.1e-15 89.4 165 33.9
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.1e-15 89.4 127 40.9
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 1.4e-15 89.0 163 33.1
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.4e-15 89.0 141 34.0
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 3.1e-15 87.8 209 30.1
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 3.1e-15 87.8 134 36.6
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 3.1e-15 87.8 181 33.7
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 3.1e-15 87.8 233 27.9
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 3.1e-15 87.8 168 31.5
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.3e-15 87.0 160 34.4
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-15 87.0 130 35.4
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 5.3e-15 87.0 141 33.3
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 6.9e-15 86.7 143 36.4
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 6.9e-15 86.7 129 38.0
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 6.9e-15 86.7 364 27.5
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 9.0e-15 86.3 167 35.9
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.2e-14 85.9 129 36.4
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.2e-14 85.9 205 29.8
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.2e-14 85.9 158 34.8
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.5e-14 85.5 186 29.6
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.5e-14 85.5 191 28.3
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.5e-14 85.5 141 33.3
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 2.0e-14 85.1 159 35.2
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.6e-14 84.7 186 30.1
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 3.4e-14 84.3 131 35.9
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 4.5e-14 84.0 130 36.9
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 4.5e-14 84.0 145 35.2
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 5.8e-14 83.6 129 37.2
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 7.6e-14 83.2 166 31.3
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 7.6e-14 83.2 178 33.1
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 7.6e-14 83.2 149 34.9
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 7.6e-14 83.2 129 36.4
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.9e-14 82.8 303 27.1
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 9.9e-14 82.8 191 31.9
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 1.3e-13 82.4 160 31.9
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 2.2e-13 81.6 121 37.2
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 2.9e-13 81.3 130 34.6
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.9e-13 81.3 140 35.7
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.9e-13 80.5 218 27.1
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 6.4e-13 80.1 140 33.6
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.4e-13 79.7 118 36.4
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 8.4e-13 79.7 118 36.4
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 1.9e-12 78.6 352 25.6
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 2.4e-12 78.2 192 28.1
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 2.4e-12 78.2 168 33.9
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 4.2e-12 77.4 160 31.2
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 5.5e-12 77.0 169 31.4
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 5.5e-12 77.0 169 30.8
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 7.1e-12 76.6 147 32.0
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 7.1e-12 76.6 130 35.4
Cfa017020 Carpinus fangiana HOM05D003229 ORTHO05D017800 9.3e-12 76.3 51 76.5
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 1.2e-11 75.9 331 24.2
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 1.2e-11 75.9 129 34.1
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 1.6e-11 75.5 141 32.6
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.1e-11 75.1 192 27.1
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 2.1e-11 75.1 193 29.0
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 3.5e-11 74.3 127 33.1
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 6.0e-11 73.6 141 31.9
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 6.0e-11 73.6 141 31.9
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 7.9e-11 73.2 141 31.9
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 7.9e-11 73.2 141 31.9
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.3e-10 72.4 130 32.3
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.8e-10 72.0 165 30.3
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 2.3e-10 71.6 164 28.7
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 3.9e-10 70.9 141 30.5
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.9e-10 70.9 131 32.1
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 3.9e-10 70.9 136 33.1
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.1e-09 69.3 141 30.5
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.1e-09 69.3 96 37.5
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.1e-09 69.3 139 30.9
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.1e-09 69.3 194 27.8
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 2.5e-09 68.2 94 40.4
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 3.3e-09 67.8 132 31.1
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.3e-09 67.8 130 30.0
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 3.3e-09 67.8 131 30.5
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 4.3e-09 67.4 124 36.3
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.6e-09 67.0 123 36.6
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 7.4e-09 66.6 122 32.0
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 9.6e-09 66.2 90 36.7
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 1.3e-08 65.9 197 27.9
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.3e-08 65.9 141 31.9
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.6e-08 65.5 190 26.8
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.6e-08 65.5 123 34.1
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 1.6e-08 65.5 123 36.6
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 2.1e-08 65.1 140 32.9
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 2.1e-08 65.1 120 33.3
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.8e-08 64.7 123 35.8
Hund15039 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.8e-08 64.7 82 42.7
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 3.7e-08 64.3 123 35.8
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 4.8e-08 63.9 147 31.3
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 6.2e-08 63.5 113 35.4
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 8.2e-08 63.2 141 27.0
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 8.2e-08 63.2 179 28.5
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 8.2e-08 63.2 151 29.8
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 8.2e-08 63.2 68 45.6
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 8.2e-08 63.2 162 25.3
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.1e-07 62.8 59 50.8
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 2.4e-07 61.6 183 31.1
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 2.4e-07 61.6 95 33.7
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 4.0e-07 60.8 104 36.5
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 4.0e-07 60.8 120 30.8
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 5.3e-07 60.5 129 30.2
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 5.3e-07 60.5 142 28.9
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 5.3e-07 60.5 113 31.0
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 5.3e-07 60.5 72 41.7
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 6.9e-07 60.1 53 49.1
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 6.9e-07 60.1 96 33.3
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 9.0e-07 59.7 129 29.5
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 9.0e-07 59.7 129 29.5
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 9.0e-07 59.7 70 40.0
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 1.2e-06 59.3 79 41.8
AUR62036294 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.5e-06 58.9 45 57.8
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.5e-06 58.9 54 50.0
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 2.6e-06 58.2 131 31.3
CAN.G2071.4 Capsicum annuum HOM05D003229 ORTHO05D003835 3.4e-06 57.8 86 39.5
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 5.8e-06 57.0 149 29.5
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 7.6e-06 56.6 90 33.3
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 7.6e-06 56.6 90 33.3
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 7.6e-06 56.6 155 25.8
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 7.6e-06 56.6 60 41.7
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.0e-05 56.2 52 50.0
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.0e-05 56.2 52 50.0


User provided reference genes

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