Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 4.0e-117 424.9 227 100.0
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.9e-111 406.0 227 95.6
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.3e-96 356.7 228 81.1
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.6e-86 323.2 228 80.3
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 9.3e-82 307.4 234 75.2
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.2e-81 307.0 239 73.6
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 2.1e-81 306.2 235 68.5
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.0e-80 303.9 235 75.3
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 8.7e-80 300.8 226 71.2
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.5e-79 300.1 226 70.8
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.9e-79 299.7 238 66.8
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 2.5e-79 299.3 226 70.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.3e-79 298.9 226 70.8
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 5.6e-79 298.1 230 68.3
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 7.4e-79 297.7 229 75.5
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 7.4e-79 297.7 233 67.8
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 9.6e-79 297.4 234 69.7
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 9.6e-79 297.4 231 70.6
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.3e-78 297.0 230 68.3
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.3e-78 297.0 228 75.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 2.8e-78 295.8 234 66.7
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.7e-78 295.4 227 75.8
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 4.8e-78 295.0 232 74.6
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.1e-77 293.9 230 68.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.1e-77 293.9 231 67.5
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.1e-77 293.9 231 67.5
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.8e-77 293.1 228 67.1
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 5.3e-77 291.6 238 65.1
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 6.9e-77 291.2 230 71.3
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.2e-76 290.4 222 67.6
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.5e-76 290.0 220 73.2
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.6e-76 289.3 227 72.7
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.6e-76 289.3 234 65.8
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 3.4e-76 288.9 227 75.8
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 7.6e-76 287.7 233 64.4
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.0e-75 287.3 226 66.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.3e-75 287.0 224 69.6
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.3e-75 287.0 236 65.7
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.3e-75 287.0 222 67.6
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.7e-75 286.6 220 72.7
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.2e-75 286.2 237 64.6
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 3.8e-75 285.4 230 67.8
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 6.5e-75 284.6 229 69.9
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 8.4e-75 284.3 232 68.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 8.4e-75 284.3 234 62.8
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.9e-74 283.1 224 74.6
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.9e-74 283.1 185 84.9
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.5e-74 282.7 222 72.5
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 3.2e-74 282.3 233 63.1
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 5.5e-74 281.6 184 78.8
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 5.5e-74 281.6 223 71.7
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 7.1e-74 281.2 227 69.2
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 7.1e-74 281.2 234 68.4
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 7.1e-74 281.2 236 69.5
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.2e-73 280.4 227 69.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.6e-73 280.0 221 69.7
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.6e-73 280.0 237 62.4
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 2.1e-73 279.6 235 62.1
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.1e-73 279.6 218 66.5
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.7e-73 279.3 218 66.1
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.7e-73 279.3 235 63.8
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 2.7e-73 279.3 220 69.5
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 2.7e-73 279.3 221 69.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 2.7e-73 279.3 220 69.5
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.7e-73 279.3 221 70.1
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 2.7e-73 279.3 225 68.9
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 3.5e-73 278.9 220 69.5
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.5e-73 278.9 234 62.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 4.6e-73 278.5 236 70.8
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 7.9e-73 277.7 230 63.9
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 7.9e-73 277.7 220 66.8
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 7.9e-73 277.7 220 66.8
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.0e-72 277.3 221 69.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.3e-72 276.9 220 67.7
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.3e-72 276.9 221 68.3
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.8e-72 276.6 221 64.7
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 3.9e-72 275.4 227 70.0
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 5.1e-72 275.0 181 80.1
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 6.7e-72 274.6 221 69.7
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 6.7e-72 274.6 220 68.6
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 6.7e-72 274.6 230 62.6
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.5e-71 273.5 221 63.3
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.5e-71 273.5 230 67.0
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.9e-71 273.1 223 69.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.3e-71 272.3 221 63.3
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 4.3e-71 271.9 228 69.3
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.3e-70 270.4 223 61.9
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.1e-70 269.6 225 60.4
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.8e-70 269.2 238 62.2
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 4.8e-70 268.5 210 66.7
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.4e-69 266.9 227 66.1
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.1e-69 265.8 183 77.0
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.1e-69 265.4 225 59.1
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 2.6e-68 262.7 227 65.6
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.6e-68 262.7 238 60.1
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 2.2e-67 259.6 196 71.9
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.6e-65 253.4 198 67.7
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.7e-65 252.7 178 77.0
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 3.5e-65 252.3 181 74.0
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 3.5e-65 252.3 216 66.2
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 5.1e-64 248.4 197 69.0
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.9e-63 246.5 189 70.4
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.3e-63 245.4 181 70.7
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.3e-62 243.8 212 67.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.6e-62 243.4 179 73.7
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.6e-60 236.1 179 71.5
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.2e-58 229.2 175 69.7
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.7e-57 226.1 227 63.0
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.5e-52 208.8 136 70.6
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.8e-48 196.8 134 68.7
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.7e-46 189.1 139 65.5
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 6.3e-46 188.3 183 59.6
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.4e-45 186.4 139 64.0
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.2e-44 184.1 139 63.3
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.6e-44 183.0 139 61.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.9e-44 181.8 139 61.2
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 7.7e-44 181.4 139 61.2
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 2.2e-43 179.9 139 60.4
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 3.8e-43 179.1 132 62.9
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-42 177.6 139 59.7
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-42 177.6 139 59.7
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.1e-42 177.6 139 59.7
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.5e-42 177.2 139 59.0
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-42 177.2 139 59.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.5e-42 177.2 139 59.7
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.9e-42 176.8 139 59.7
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 4.7e-41 172.2 137 57.7
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.1e-37 161.0 155 51.6
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.4e-37 159.8 102 75.5
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.1e-37 159.5 156 52.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 7.2e-34 148.3 105 75.2
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 6.8e-32 141.7 103 77.7
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.8e-30 136.3 179 44.1
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 6.3e-30 135.2 151 46.4
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.2e-28 131.0 178 47.8
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.6e-28 130.6 129 60.5
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.5e-28 129.4 151 47.0
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.2e-27 126.7 131 59.5
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 3.0e-24 116.3 227 44.1
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.2e-24 115.5 181 42.0
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 1.7e-22 110.5 175 34.9
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-21 107.8 87 63.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.5e-20 102.8 145 37.9
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 4.5e-20 102.4 151 37.7
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.5e-18 97.4 71 63.4
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.3e-16 90.1 59 74.6
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.0e-16 89.7 97 57.7
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 7.5e-15 85.1 101 45.5
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.4e-13 80.1 108 40.7
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 6.2e-09 65.5 48 62.5
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.4e-07 59.3 79 40.5
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.4e-07 59.3 79 40.5


User provided reference genes

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