Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 4.8e-87 324.7 194 100.0
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 9.1e-62 240.7 194 68.0
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 8.6e-28 127.9 174 44.8
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-27 127.1 172 46.5
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.5e-27 127.1 182 46.7
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.5e-27 127.1 166 43.4
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.5e-27 126.3 173 46.2
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.3e-27 125.6 172 45.9
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 9.5e-27 124.4 177 46.9
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-26 123.6 172 45.3
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.6e-26 122.5 182 46.2
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.1e-25 119.4 175 45.1
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 8.9e-25 117.9 171 43.9
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 5.8e-24 115.2 178 39.9
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 5.8e-24 115.2 176 40.9
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 5.8e-24 115.2 171 50.3
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 9.9e-24 114.4 164 43.3
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 1.7e-23 113.6 167 45.5
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 8.4e-23 111.3 175 42.3
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 9.2e-22 107.8 140 45.0
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.2e-21 107.5 200 45.5
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.7e-21 106.3 170 40.6
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 3.5e-21 105.9 170 40.6
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.0e-20 104.4 198 38.4
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.3e-20 103.2 135 45.2
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.3e-20 103.2 168 41.1
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 3.9e-20 102.4 183 41.5
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 3.9e-20 102.4 174 39.7
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 8.6e-20 101.3 169 37.3
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 2.5e-19 99.8 178 38.2
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 4.3e-19 99.0 186 38.2
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 4.3e-19 99.0 169 37.3
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 2.8e-18 96.3 170 35.9
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 6.2e-18 95.1 168 40.5
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.4e-17 94.0 131 45.0
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.8e-17 93.6 180 37.2
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 2.4e-17 93.2 194 36.1
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 3.1e-17 92.8 117 47.0
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 5.2e-17 92.0 169 43.2
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 8.9e-17 91.3 168 35.7
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 7.6e-16 88.2 103 50.5
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 9.9e-16 87.8 178 35.4
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.2e-15 86.7 186 33.3
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 2.9e-15 86.3 175 45.7
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.9e-15 86.3 169 37.3
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 2.9e-15 86.3 159 37.7
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 6.4e-15 85.1 178 36.5
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.4e-15 85.1 171 36.3
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.4e-15 85.1 171 36.3
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 1.9e-14 83.6 177 36.2
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 2.4e-14 83.2 183 42.1
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 2.4e-14 83.2 175 36.0
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 2.4e-14 83.2 180 35.0
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 5.4e-14 82.0 168 32.7
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.1e-14 81.6 174 32.8
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.1e-14 81.6 176 32.4
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 7.1e-14 81.6 180 35.0
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 7.1e-14 81.6 179 34.1
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 9.3e-14 81.3 189 32.8
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 2.7e-13 79.7 189 34.9
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.7e-13 79.7 204 31.9
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-13 79.7 169 33.1
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-13 79.7 176 32.4
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 3.5e-13 79.3 182 34.1
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.5e-13 79.3 171 35.1
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 4.6e-13 79.0 181 33.7
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 4.6e-13 79.0 186 32.8
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 4.6e-13 79.0 177 32.2
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 4.6e-13 79.0 165 35.2
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 6.0e-13 78.6 204 31.9
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 6.0e-13 78.6 172 32.6
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.8e-13 78.2 203 31.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 7.8e-13 78.2 170 32.4
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.0e-12 77.8 172 32.6
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-12 77.4 108 46.3
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.7e-12 77.0 180 33.3
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 3.0e-12 76.3 175 33.1
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 3.0e-12 76.3 196 34.2
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 3.0e-12 76.3 202 30.7
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 3.9e-12 75.9 171 32.7
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 3.9e-12 75.9 181 32.0
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 5.1e-12 75.5 205 31.7
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 5.1e-12 75.5 205 31.7
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 5.1e-12 75.5 178 35.4
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 8.7e-12 74.7 97 43.3
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 8.7e-12 74.7 189 34.4
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.5e-11 73.9 182 33.5
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.9e-11 73.6 193 32.6
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 2.5e-11 73.2 192 31.2
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.3e-11 72.4 177 32.8
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 4.3e-11 72.4 177 31.1
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.6e-11 72.0 169 34.3
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 7.3e-11 71.6 182 33.0
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 9.6e-11 71.2 98 45.9
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 9.6e-11 71.2 166 33.7
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 9.6e-11 71.2 173 33.5
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-10 70.9 167 35.3
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 2.8e-10 69.7 178 32.6
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.8e-10 68.9 180 37.2
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.4e-09 67.4 167 31.7
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 1.4e-09 67.4 171 31.6
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.8e-09 67.0 170 34.1
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 3.1e-09 66.2 175 30.9
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 4.0e-09 65.9 180 27.8
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 6.9e-09 65.1 167 32.3
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.9e-09 65.1 170 32.4
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 1.5e-08 63.9 90 42.2
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.5e-08 63.9 204 31.4
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-08 63.9 174 32.8
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.0e-08 63.5 147 29.9
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 2.6e-08 63.2 87 42.5
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 3.4e-08 62.8 117 35.9
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 5.8e-08 62.0 96 39.6
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 7.6e-08 61.6 88 39.8
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-07 60.8 70 48.6
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.3e-07 60.8 70 48.6
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.7e-07 60.5 87 46.0
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.7e-07 60.5 149 31.5
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 1.7e-07 60.5 189 36.5
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 2.2e-07 60.1 87 47.1
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.8e-07 59.3 70 48.6
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 6.4e-07 58.5 89 42.7
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 1.4e-06 57.4 89 37.1
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.9e-06 57.0 174 30.5
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.4e-06 56.6 170 32.4
unitig_749.g13883 Utricularia gibba HOM05D005317 ORTHO05D005146 2.4e-06 56.6 107 40.2
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 3.2e-06 56.2 120 34.2
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 4.2e-06 55.8 98 40.8
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 4.2e-06 55.8 165 29.1
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 5.4e-06 55.5 161 30.4
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 7.1e-06 55.1 167 28.7


User provided reference genes

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