Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 7.9e-61 236.9 116 100.0
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.0e-52 209.9 114 90.4
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-34 149.4 115 66.1
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 6.1e-29 131.0 112 63.4
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.0e-28 128.6 113 60.2
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 4.4e-27 124.8 112 56.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.7e-27 124.4 114 58.8
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.7e-27 123.6 115 61.7
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 4.8e-26 121.3 113 56.6
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 8.2e-26 120.6 107 60.7
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.1e-25 120.2 114 60.5
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-25 119.0 115 55.7
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 3.1e-25 118.6 109 56.0
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 7.0e-25 117.5 113 53.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.6e-24 115.5 114 55.3
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 2.6e-24 115.5 113 53.1
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.5e-24 115.2 113 54.0
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 3.5e-24 115.2 111 57.7
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 4.5e-24 114.8 114 51.8
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.5e-24 114.8 113 51.3
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.9e-24 114.4 114 53.5
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.3e-23 113.2 114 50.9
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.2e-23 112.5 113 51.3
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.0e-23 111.3 114 54.4
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.1e-22 110.2 113 51.3
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.1e-22 110.2 113 51.3
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 1.9e-22 109.4 113 50.4
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 4.2e-22 108.2 131 49.6
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 7.2e-22 107.5 109 51.4
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 1.6e-21 106.3 109 53.2
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 3.6e-21 105.1 113 47.8
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.6e-21 105.1 117 50.4
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 6.1e-21 104.4 116 51.7
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 1.0e-20 103.6 117 50.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.3e-20 102.4 111 55.0
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.0e-20 102.1 125 47.2
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.0e-20 101.7 109 54.1
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 6.8e-20 100.9 134 47.0
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 8.8e-20 100.5 114 53.5
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.8e-20 100.5 114 53.5
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.2e-19 100.1 76 65.8
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.2e-19 100.1 117 47.9
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.0e-19 99.4 112 50.9
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.6e-19 99.0 114 52.6
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 3.4e-19 98.6 114 48.2
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 3.4e-19 98.6 114 50.0
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 7.5e-19 97.4 114 52.6
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 7.5e-19 97.4 114 52.6
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.7e-19 97.1 76 63.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-18 96.7 106 51.9
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.3e-18 96.7 115 49.6
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.3e-18 96.7 109 50.5
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.8e-18 94.7 109 50.5
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 4.8e-18 94.7 69 65.2
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.3e-18 94.4 109 50.5
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.8e-17 92.8 113 46.0
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.4e-17 92.4 110 49.1
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.4e-17 92.4 110 49.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 2.4e-17 92.4 65 69.2
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 5.3e-17 91.3 65 67.7
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 7.0e-17 90.9 71 64.8
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 7.0e-17 90.9 119 47.9
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 7.0e-17 90.9 65 66.2
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 7.0e-17 90.9 112 46.4
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 9.1e-17 90.5 75 62.7
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.2e-16 90.1 116 49.1
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.2e-16 90.1 110 51.8
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.6e-16 89.7 116 49.1
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.6e-16 89.7 77 58.4
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.6e-16 89.7 115 46.1
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 2.0e-16 89.4 116 43.1
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 3.5e-16 88.6 113 45.1
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 3.5e-16 88.6 116 48.3
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 5.9e-16 87.8 113 43.4
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 7.7e-16 87.4 120 46.7
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.0e-15 87.0 115 50.4
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.3e-15 86.7 112 47.3
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.3e-15 86.7 112 47.3
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.7e-15 86.3 114 45.6
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 2.2e-15 85.9 114 48.2
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.2e-15 85.9 128 41.4
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.9e-15 85.5 80 60.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 3.8e-15 85.1 97 49.5
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 5.0e-15 84.7 69 62.3
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 6.5e-15 84.3 115 47.8
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 6.5e-15 84.3 113 46.0
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 2.5e-14 82.4 109 48.6
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.2e-14 82.0 134 41.0
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 4.2e-14 81.6 79 51.9
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 5.5e-14 81.3 86 48.8
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.5e-14 81.3 111 42.3
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 7.2e-14 80.9 111 44.1
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.2e-14 80.9 91 48.4
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.6e-13 79.7 66 65.2
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.6e-13 79.7 77 57.1
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.7e-13 79.0 70 54.3
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 4.7e-13 78.2 74 56.8
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 8.0e-13 77.4 108 42.6
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 8.0e-13 77.4 114 44.7
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.4e-12 76.6 116 39.7
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 1.8e-12 76.3 110 40.9
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 3.0e-12 75.5 116 43.1
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-12 75.5 144 36.1
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 5.2e-12 74.7 114 37.7
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 6.8e-12 74.3 101 42.6
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 8.8e-12 73.9 66 60.6
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 1.5e-11 73.2 79 50.6
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.6e-11 72.4 118 39.0
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.4e-11 71.6 116 37.1
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 5.7e-11 71.2 97 45.4
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 7.5e-11 70.9 63 52.4
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 7.5e-11 70.9 146 34.2
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 9.8e-11 70.5 109 41.3
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 9.8e-11 70.5 119 39.5
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 9.8e-11 70.5 112 45.5
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 9.8e-11 70.5 110 35.5
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.7e-10 69.7 51 62.7
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.2e-10 69.3 50 58.0
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 2.2e-10 69.3 116 43.1
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.7e-10 68.6 68 47.1
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 3.7e-10 68.6 59 50.8
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 6.3e-10 67.8 107 41.1
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 1.1e-09 67.0 55 60.0
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.1e-09 67.0 66 51.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.4e-09 66.6 113 40.7
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 3.1e-09 65.5 68 48.5
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.1e-09 65.5 40 75.0
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 5.4e-09 64.7 109 43.1
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 5.4e-09 64.7 80 42.5
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 9.1e-09 63.9 44 68.2
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.6e-08 63.2 82 41.5
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.0e-08 62.8 43 69.8
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.0e-08 62.8 65 53.8
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 3.5e-08 62.0 50 62.0
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.5e-08 62.0 69 43.5
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 3.5e-08 62.0 40 67.5
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 3.5e-08 62.0 112 36.6
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 5.9e-08 61.2 43 65.1
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.0e-07 60.5 61 55.7
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 1.0e-07 60.5 109 38.5
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.3e-07 59.3 66 53.0
Psat6g015640 Pisum sativum HOM05D004288 ORTHO05D004997 2.9e-07 58.9 100 38.0
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 3.8e-07 58.5 39 66.7
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.8e-07 58.5 65 44.6
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 6.6e-07 57.8 44 65.9
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.1e-06 57.0 59 54.2
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 1.1e-06 57.0 56 53.6
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 1.5e-06 56.6 49 59.2
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 1.5e-06 56.6 39 66.7
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 1.5e-06 56.6 116 32.8
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 1.9e-06 56.2 50 58.0
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 1.9e-06 56.2 49 57.1
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 1.9e-06 56.2 49 57.1
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 9.5e-06 53.9 49 55.1


User provided reference genes

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