Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.6e-194 681.4 342 100.0
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 4.7e-130 468.4 342 75.7
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 3.5e-101 372.5 336 62.5
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 6.3e-98 361.7 335 59.7
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.4e-97 359.8 344 57.3
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 2.0e-96 356.7 342 57.6
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 4.5e-96 355.5 335 60.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 5.9e-96 355.1 339 58.1
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.0e-95 354.4 339 57.8
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 5.0e-95 352.1 338 57.4
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.2e-93 347.4 354 57.3
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 8.8e-92 341.3 342 55.6
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.5e-91 340.5 336 57.4
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.5e-91 339.7 343 55.7
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 5.7e-91 338.6 332 57.2
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.3e-90 337.4 333 55.3
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.3e-90 337.4 343 55.7
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.7e-90 337.0 336 56.2
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.7e-90 337.0 342 54.7
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 8.2e-90 334.7 347 55.3
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 8.2e-90 334.7 338 56.8
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.1e-89 334.3 340 55.9
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.1e-89 334.3 336 56.8
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.8e-89 333.6 338 57.1
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 4.1e-89 332.4 347 55.0
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 4.1e-89 332.4 339 56.0
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 9.1e-89 331.3 333 55.0
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 2.0e-88 330.1 341 55.4
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 4.5e-88 328.9 336 56.0
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 2.2e-87 326.6 306 60.5
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.2e-87 326.6 336 56.8
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 2.2e-87 326.6 337 54.3
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 2.9e-87 326.2 332 53.9
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 3.8e-87 325.9 248 64.9
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 1.1e-86 324.3 342 54.1
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.5e-86 323.2 346 52.9
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.5e-86 323.2 339 54.3
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 3.2e-86 322.8 347 53.9
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 4.2e-86 322.4 341 55.1
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 9.4e-86 321.2 246 65.4
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.7e-85 319.7 340 53.5
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 6.1e-85 318.5 344 53.8
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 6.1e-85 318.5 345 53.9
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.4e-84 317.4 331 54.4
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.8e-84 317.0 334 53.3
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 3.0e-84 316.2 280 63.9
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 3.0e-84 316.2 347 54.8
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 3.0e-84 316.2 331 54.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 2.0e-83 313.5 250 64.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.3e-83 312.8 343 51.6
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 4.4e-83 312.4 251 65.7
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 9.7e-83 311.2 341 54.8
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 9.7e-83 311.2 339 53.4
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.3e-82 310.8 246 64.6
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.3e-82 310.8 343 52.2
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.8e-82 308.9 325 52.6
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 6.3e-82 308.5 320 55.9
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 3.1e-81 306.2 337 52.8
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 4.1e-81 305.8 283 58.0
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 9.1e-81 304.7 342 52.3
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 2.0e-80 303.5 337 51.6
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.4e-80 302.8 246 64.2
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.4e-80 302.8 246 62.2
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 4.5e-80 302.4 311 55.0
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 7.7e-80 301.6 339 48.4
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.7e-80 301.6 246 62.6
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.9e-79 299.7 334 53.6
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 5.0e-79 298.9 337 52.2
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 5.0e-79 298.9 336 52.7
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 5.0e-79 298.9 332 51.2
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 6.5e-79 298.5 340 51.8
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 8.5e-79 298.1 334 52.1
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 8.5e-79 298.1 304 56.2
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 1.1e-78 297.7 246 62.6
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.9e-78 297.0 339 51.0
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.5e-78 296.6 338 51.8
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 2.5e-78 296.6 336 52.1
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 2.5e-78 296.6 246 62.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 7.2e-78 295.0 364 48.6
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.7e-77 293.1 246 60.2
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.7e-77 292.4 246 59.8
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 6.1e-77 292.0 334 49.1
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 8.0e-77 291.6 328 50.9
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 6.7e-76 288.5 335 49.3
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.7e-74 283.9 352 49.1
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.7e-74 283.9 361 47.1
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 2.2e-74 283.5 278 56.1
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 3.7e-74 282.7 338 47.6
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.4e-73 280.0 345 46.4
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 7.0e-73 278.5 254 61.4
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.2e-71 273.5 276 55.4
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 5.0e-71 272.3 251 57.4
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 8.5e-71 271.6 238 60.5
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.1e-70 271.2 276 54.3
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 4.7e-69 265.8 272 52.9
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 4.7e-69 265.8 191 69.6
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 6.1e-69 265.4 279 51.3
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 2.3e-68 263.5 280 51.1
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 4.0e-68 262.7 247 55.5
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 4.0e-68 262.7 247 55.5
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 5.2e-68 262.3 247 55.9
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 5.2e-68 262.3 247 55.9
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.2e-67 261.2 348 45.4
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 2.0e-67 260.4 276 51.4
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 4.4e-67 259.2 339 47.8
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.2e-64 251.1 340 45.0
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 7.7e-64 248.4 193 65.8
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.6e-59 233.4 240 55.0
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 3.3e-54 216.5 287 48.4
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 2.2e-50 203.8 189 57.7
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 1.6e-48 197.6 253 48.6
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 5.0e-47 192.6 222 50.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.7e-45 186.0 177 55.9
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 8.9e-44 181.8 170 58.2
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 2.6e-43 180.3 304 38.5
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.7e-42 176.4 166 57.2
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 6.4e-42 175.6 298 36.9
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 5.4e-41 172.6 266 38.0
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 7.8e-40 168.7 102 79.4
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 8.0e-37 158.7 268 34.7
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 8.9e-36 155.2 130 63.1
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 9.8e-35 151.8 80 85.0
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 1.5e-30 137.9 182 40.7
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 6.0e-24 115.9 80 66.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 3.0e-23 113.6 80 66.2
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.1e-20 105.1 119 53.8
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.7e-18 97.8 70 64.3
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.1e-16 90.9 243 27.2
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 2.7e-16 90.5 69 59.4
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.0e-15 88.6 139 41.0
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 2.3e-15 87.4 305 26.6
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 5.3e-12 76.3 46 76.1
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.4e-09 67.4 127 34.6
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.2e-09 66.6 39 74.4
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 6.0e-08 62.8 41 70.7
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 6.0e-08 62.8 114 37.7
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.9e-06 57.8 52 50.0
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 1.9e-06 57.8 78 46.2
CSS0008660 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 5.6e-06 56.2 80 43.8


User provided reference genes

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