Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.8e-100 369.4 202 100.0
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 2.8e-77 292.4 204 80.9
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.2e-42 176.4 187 61.0
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.4e-41 172.9 189 57.1
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 6.4e-34 148.3 189 54.0
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.6e-32 143.7 184 56.0
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 2.1e-32 143.3 196 50.0
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.3e-31 139.8 121 64.5
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 3.3e-30 136.0 189 48.7
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 6.2e-29 131.7 190 46.3
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.1e-28 131.0 181 44.2
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.4e-28 130.6 188 45.7
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 5.3e-28 128.6 183 45.9
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 9.9e-27 124.4 181 42.0
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 1.7e-26 123.6 204 43.6
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 2.9e-26 122.9 133 56.4
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.8e-26 122.5 181 42.0
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.4e-25 120.6 181 41.4
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 7.1e-25 118.2 190 44.7
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.8e-23 113.6 183 42.1
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.3e-23 113.2 183 44.3
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 1.1e-22 110.9 182 40.7
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 2.5e-22 109.8 192 41.7
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 9.6e-22 107.8 190 40.0
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 4.8e-21 105.5 196 40.3
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 1.5e-19 100.5 190 42.6
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 2.6e-19 99.8 186 44.6
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 4.5e-19 99.0 173 39.9
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 5.8e-19 98.6 179 41.3
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 1.0e-18 97.8 180 44.4
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 3.8e-18 95.9 197 39.6
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.1e-17 94.4 179 42.5
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 4.2e-17 92.4 213 36.6
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 7.1e-17 91.7 174 42.0
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 9.3e-17 91.3 181 41.4
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.2e-16 90.9 170 38.2
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 1.2e-16 90.9 186 43.0
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.7e-16 89.7 178 42.1
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 3.5e-16 89.4 188 35.6
DCAR_017972 Daucus carota HOM05D007262 ORTHO05D008524 7.9e-16 88.2 189 37.0
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 1.0e-15 87.8 169 39.6
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.3e-15 86.7 178 36.5
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 3.0e-15 86.3 127 44.9
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 3.9e-15 85.9 195 38.5
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 5.1e-15 85.5 207 34.8
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 5.1e-15 85.5 182 41.8
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 1.5e-14 84.0 67 67.2
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 4.3e-14 82.4 180 38.3
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 7.4e-14 81.6 187 38.0
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.8e-13 79.7 183 38.3
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.8e-13 79.7 182 38.5
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 6.2e-13 78.6 105 44.8
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 8.2e-13 78.2 94 50.0
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 1.4e-12 77.4 144 38.2
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.8e-12 77.0 208 32.2
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 2.4e-12 76.6 92 48.9
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 2.4e-12 76.6 84 47.6
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 2.4e-12 76.6 84 47.6
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 2.4e-12 76.6 82 48.8
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 3.1e-12 76.3 84 48.8
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 5.3e-12 75.5 90 46.7
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 5.3e-12 75.5 88 48.9
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 5.3e-12 75.5 91 46.2
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 5.3e-12 75.5 184 35.3
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 6.9e-12 75.1 88 48.9
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 1.2e-11 74.3 84 47.6
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.5e-11 73.9 77 55.8
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.5e-11 73.9 132 39.4
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 2.6e-11 73.2 85 49.4
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 3.4e-11 72.8 62 66.1
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 3.4e-11 72.8 79 44.3
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 3.4e-11 72.8 78 50.0
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 5.8e-11 72.0 88 47.7
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 5.8e-11 72.0 88 47.7
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 5.8e-11 72.0 91 46.2
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 5.8e-11 72.0 88 47.7
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 7.6e-11 71.6 89 46.1
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 7.6e-11 71.6 89 46.1
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 7.6e-11 71.6 88 47.7
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.3e-10 70.9 78 48.7
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 1.3e-10 70.9 130 37.7
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 1.7e-10 70.5 157 40.1
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 2.2e-10 70.1 78 50.0
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 3.8e-10 69.3 139 38.8
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 3.8e-10 69.3 139 38.8
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 8.4e-10 68.2 114 41.2
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 1.4e-09 67.4 139 38.8
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 2.5e-09 66.6 86 46.5
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 3.2e-09 66.2 148 36.5
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 4.2e-09 65.9 89 41.6
Sabra18G0078900 Salix brachista HOM05D007262 ORTHO05D008524 2.1e-08 63.5 73 46.6
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 2.1e-08 63.5 85 45.9
CsaV3_1G031630 Cucumis sativus L. HOM05D015664 ORTHO05D008524 2.7e-08 63.2 92 47.8
COL.COLO4_37718 Corchorus olitorius HOM05D018436 ORTHO05D008524 4.6e-08 62.4 66 50.0
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 4.6e-08 62.4 171 33.9
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 6.1e-08 62.0 203 28.1
Thecc.09G176700 Theobroma cacao HOM05D018436 ORTHO05D025173 6.1e-08 62.0 99 41.4
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 7.9e-08 61.6 84 42.9
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.3e-07 60.8 88 46.6
QL02p097844 Quercus lobata HOM05D007262 ORTHO05D008524 1.3e-07 60.8 139 33.8
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 2.3e-07 60.1 108 34.3
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 2.3e-07 60.1 56 53.6
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 2.3e-07 60.1 59 52.5
CiPaw.08G035800 Carya illinoinensis HOM05D007262 ORTHO05D008524 5.1e-07 58.9 143 35.7
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 6.7e-07 58.5 56 51.8
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 6.7e-07 58.5 88 44.3
ClCG06G013380 Citrullus lanatus HOM05D015664 ORTHO05D008524 6.7e-07 58.5 159 34.6
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-06 57.8 144 36.1
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 1.1e-06 57.8 144 36.1
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 1.1e-06 57.8 144 36.1
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.1e-06 57.8 65 47.7
COL.COLO4_28647 Corchorus olitorius HOM05D015664 ORTHO05D008524 1.1e-06 57.8 150 36.0
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 1.1e-06 57.8 113 40.7
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.5e-06 57.4 83 44.6
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-06 57.4 73 46.6
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.9e-06 57.0 70 44.3
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.9e-06 57.0 59 47.5
MELO3C017459.2 Cucumis melo HOM05D015664 ORTHO05D008524 3.3e-06 56.2 140 37.9
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.3e-06 56.2 73 45.2
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 3.3e-06 56.2 88 40.9
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.3e-06 55.8 56 51.8
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.3e-06 55.8 56 51.8
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.3e-06 55.8 55 49.1
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 4.3e-06 55.8 56 51.8
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 4.3e-06 55.8 61 47.5
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 4.3e-06 55.8 57 49.1
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 5.7e-06 55.5 56 50.0
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 5.7e-06 55.5 69 46.4
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.7e-06 55.5 69 46.4
Lalb_Chr12g0199441 Lupinus albus HOM05D007262 ORTHO05D008524 5.7e-06 55.5 145 40.0
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 5.7e-06 55.5 65 46.2
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 7.4e-06 55.1 90 40.0
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 7.4e-06 55.1 56 51.8
Rhsim01G0241900 Rhododendron simsii HOM05D002277 ORTHO05D001770 7.4e-06 55.1 68 41.2
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 9.7e-06 54.7 115 33.0
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 9.7e-06 54.7 57 47.4


User provided reference genes

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