Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 5.1e-35 150.6 79 100.0
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 8.7e-19 96.7 52 98.1
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 9.6e-18 93.2 52 94.2
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.3e-17 92.8 52 90.4
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.6e-17 92.4 52 92.3
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.6e-17 92.4 52 92.3
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.6e-17 92.4 52 92.3
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 2.1e-17 92.0 55 87.3
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 92.3
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 2.1e-17 92.0 52 90.4
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 2.8e-17 91.7 52 90.4
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 2.8e-17 91.7 52 92.3
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 3.6e-17 91.3 52 90.4
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 3.6e-17 91.3 52 90.4
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 3.6e-17 91.3 52 90.4
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 3.6e-17 91.3 52 90.4
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 4.8e-17 90.9 52 90.4
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 4.8e-17 90.9 52 90.4
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 6.2e-17 90.5 52 90.4
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 6.2e-17 90.5 54 88.9
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 6.2e-17 90.5 60 81.7
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 6.2e-17 90.5 52 90.4
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 6.2e-17 90.5 57 82.5
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 8.1e-17 90.1 52 90.4
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 8.1e-17 90.1 52 88.5
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 1.1e-16 89.7 52 90.4
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-16 89.7 52 90.4
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-16 89.7 52 90.4
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 1.1e-16 89.7 52 92.3
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 1.1e-16 89.7 52 88.5
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.1e-16 89.7 51 90.2
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.8e-16 89.0 53 83.0
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 2.4e-16 88.6 52 90.4
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 2.4e-16 88.6 52 84.6
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 2.4e-16 88.6 52 90.4
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 2.4e-16 88.6 52 88.5
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 2.4e-16 88.6 53 88.7
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 2.4e-16 88.6 53 88.7
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 3.1e-16 88.2 52 86.5
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.1e-16 88.2 52 90.4
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.1e-16 88.2 52 88.5
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 3.1e-16 88.2 52 84.6
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 3.1e-16 88.2 51 88.2
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 3.1e-16 88.2 52 88.5
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 4.0e-16 87.8 52 88.5
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.3e-16 87.4 52 88.5
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 6.9e-16 87.0 52 88.5
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 6.9e-16 87.0 52 88.5
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 6.9e-16 87.0 53 86.8
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 1.2e-15 86.3 52 80.8
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.2e-15 86.3 53 81.1
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.2e-15 86.3 53 81.1
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.2e-15 86.3 53 81.1
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 1.2e-15 86.3 52 86.5
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.5e-15 85.9 52 88.5
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 1.5e-15 85.9 52 84.6
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 1.5e-15 85.9 52 82.7
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 2.0e-15 85.5 52 86.5
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 2.0e-15 85.5 52 86.5
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.0e-15 85.5 52 84.6
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 2.0e-15 85.5 52 86.5
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 2.6e-15 85.1 53 79.2
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 2.6e-15 85.1 52 82.7
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 2.6e-15 85.1 60 75.0
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.4e-15 84.7 52 84.6
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.4e-15 84.7 52 84.6
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 3.4e-15 84.7 52 80.8
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 4.5e-15 84.3 53 81.1
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 4.5e-15 84.3 50 84.0
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 5.8e-15 84.0 53 77.4
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 5.8e-15 84.0 53 77.4
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 5.8e-15 84.0 53 77.4
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 5.8e-15 84.0 52 82.7
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 5.8e-15 84.0 53 83.0
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 5.8e-15 84.0 52 82.7
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 7.6e-15 83.6 53 77.4
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 7.6e-15 83.6 52 82.7
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 7.6e-15 83.6 52 82.7
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 7.6e-15 83.6 52 80.8
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 7.6e-15 83.6 52 80.8
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 9.9e-15 83.2 53 79.2
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 9.9e-15 83.2 52 82.7
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 9.9e-15 83.2 51 82.4
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 9.9e-15 83.2 55 78.2
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 1.3e-14 82.8 53 75.5
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 1.3e-14 82.8 53 75.5
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 1.3e-14 82.8 53 75.5
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.3e-14 82.8 52 82.7
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.3e-14 82.8 52 82.7
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.7e-14 82.4 52 78.8
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.7e-14 82.4 52 76.9
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 1.7e-14 82.4 52 86.5
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.2e-14 82.0 52 80.8
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.9e-14 81.6 52 80.8
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.9e-14 81.6 52 78.8
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.8e-14 81.3 52 76.9
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 3.8e-14 81.3 53 79.2
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 4.9e-14 80.9 52 76.9
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 6.4e-14 80.5 55 78.2
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 8.4e-14 80.1 52 76.9
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 8.4e-14 80.1 51 82.4
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 8.4e-14 80.1 52 76.9
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 8.4e-14 80.1 52 76.9
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 8.4e-14 80.1 52 76.9
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 8.4e-14 80.1 49 83.7
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 8.4e-14 80.1 49 83.7
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.1e-13 79.7 52 76.9
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 1.4e-13 79.3 52 78.8
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.9e-13 79.0 52 78.8
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.4e-13 78.6 52 76.9
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.4e-13 78.6 52 76.9
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 3.2e-13 78.2 52 75.0
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 3.2e-13 78.2 52 75.0
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.2e-13 77.8 52 78.8
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.2e-13 77.8 52 78.8
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 5.4e-13 77.4 80 60.0
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 5.4e-13 77.4 50 80.0
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 5.4e-13 77.4 50 80.0
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 5.4e-13 77.4 52 76.9
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 7.1e-13 77.0 52 76.9
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 9.3e-13 76.6 52 75.0
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 2.1e-12 75.5 52 76.9
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.5e-12 74.7 49 73.5
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 3.5e-12 74.7 50 78.0
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 4.6e-12 74.3 52 75.0
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 4.6e-12 74.3 52 73.1
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 6.0e-12 73.9 60 68.3
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 6.0e-12 73.9 52 71.2
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.0e-11 73.2 52 73.1
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 3.9e-11 71.2 54 74.1
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 1.5e-10 69.3 52 69.2
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 7.4e-10 67.0 52 69.2
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 2.8e-09 65.1 53 62.3
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 2.8e-09 65.1 52 65.4
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.7e-09 64.7 52 67.3
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 6.2e-09 63.9 52 65.4
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 1.4e-08 62.8 44 68.2
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.4e-08 62.8 52 63.5
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 3.1e-08 61.6 52 61.5
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.3e-08 60.8 52 65.4
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.3e-08 60.8 52 65.4
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 4.9e-06 54.3 53 52.8


User provided reference genes

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