Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 1.0e-213 746.5 382 100.0
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 1.1e-42 178.3 153 69.9
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 4.5e-28 129.8 153 53.6
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 5.8e-28 129.4 164 53.7
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.0e-27 128.6 153 54.9
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 2.5e-26 124.0 153 53.6
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 2.5e-26 124.0 153 53.6
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.8e-22 110.5 153 45.1
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.5e-20 104.8 157 44.6
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.0e-19 102.1 152 44.7
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 1.0e-19 102.1 150 45.3
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 1.3e-19 101.7 152 47.4
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 3.8e-19 100.1 152 44.1
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 5.0e-19 99.8 153 45.8
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 8.4e-19 99.0 150 44.7
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.1e-18 98.6 172 40.7
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 1.1e-18 98.6 152 45.4
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.9e-18 97.8 152 44.1
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 1.9e-18 97.8 152 44.1
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 4.2e-18 96.7 152 46.1
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 5.5e-18 96.3 154 48.1
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.2e-17 95.1 152 42.8
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 1.2e-17 95.1 152 48.0
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 1.6e-17 94.7 151 45.7
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.1e-17 94.4 150 43.3
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 4.6e-17 93.2 153 47.1
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 7.9e-17 92.4 152 43.4
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 7.9e-17 92.4 153 43.8
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.3e-16 90.9 152 42.1
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.3e-16 90.9 150 44.0
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 3.0e-16 90.5 212 36.3
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 3.0e-16 90.5 150 47.3
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 3.9e-16 90.1 153 43.8
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 3.9e-16 90.1 150 44.0
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.1e-16 89.7 207 36.7
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.1e-16 89.7 150 43.3
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 6.7e-16 89.4 150 42.7
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 6.7e-16 89.4 150 42.7
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 6.7e-16 89.4 157 42.7
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 6.7e-16 89.4 152 41.4
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 6.7e-16 89.4 139 43.9
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 1.1e-15 88.6 143 43.4
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.1e-15 88.6 157 40.8
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.9e-15 87.8 157 40.1
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 2.5e-15 87.4 153 41.8
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 2.5e-15 87.4 150 42.0
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 2.5e-15 87.4 152 43.4
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 3.3e-15 87.0 150 40.7
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 3.3e-15 87.0 150 40.7
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 4.3e-15 86.7 150 41.3
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 4.3e-15 86.7 154 42.2
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 5.7e-15 86.3 152 43.4
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 5.7e-15 86.3 150 42.7
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 7.4e-15 85.9 150 40.0
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 7.4e-15 85.9 150 42.0
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 9.7e-15 85.5 152 41.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 9.7e-15 85.5 150 42.7
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.6e-14 84.7 150 42.7
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.2e-14 84.3 152 44.1
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.2e-14 84.3 152 44.1
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.8e-14 84.0 150 42.0
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 2.8e-14 84.0 150 42.7
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 6.3e-14 82.8 150 42.0
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 6.3e-14 82.8 152 40.1
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 6.3e-14 82.8 154 40.3
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 6.3e-14 82.8 150 40.7
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 6.3e-14 82.8 150 42.0
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 8.2e-14 82.4 150 40.0
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 1.1e-13 82.0 150 39.3
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 1.4e-13 81.6 151 39.1
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.4e-13 81.6 152 44.1
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 1.4e-13 81.6 151 41.7
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 1.8e-13 81.3 165 38.2
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 1.8e-13 81.3 158 41.8
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 1.8e-13 81.3 150 41.3
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 1.8e-13 81.3 150 40.7
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 1.8e-13 81.3 153 39.9
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.4e-13 80.9 150 40.0
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 2.4e-13 80.9 151 40.4
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 3.1e-13 80.5 150 40.0
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 3.1e-13 80.5 141 42.6
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 3.1e-13 80.5 153 40.5
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 3.1e-13 80.5 156 39.7
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 4.1e-13 80.1 156 40.4
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 4.1e-13 80.1 152 40.1
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 5.3e-13 79.7 152 40.1
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 6.9e-13 79.3 153 39.9
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 6.9e-13 79.3 152 41.4
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 6.9e-13 79.3 156 41.0
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 9.0e-13 79.0 193 36.8
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 9.0e-13 79.0 153 39.9
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 9.0e-13 79.0 153 39.9
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 9.0e-13 79.0 150 40.0
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.2e-12 78.6 150 40.7
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.2e-12 78.6 150 40.0
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.2e-12 78.6 152 39.5
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.2e-12 78.6 152 39.5
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 1.5e-12 78.2 153 39.9
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-12 78.2 151 38.4
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-12 78.2 155 39.4
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 1.5e-12 78.2 151 38.4
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 2.0e-12 77.8 155 39.4
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.6e-12 77.4 207 35.3
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 2.6e-12 77.4 150 40.0
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 3.4e-12 77.0 150 42.0
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 3.4e-12 77.0 150 40.0
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 3.4e-12 77.0 155 40.6
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 4.5e-12 76.6 158 39.2
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 4.5e-12 76.6 152 39.5
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 5.9e-12 76.3 152 38.8
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 7.7e-12 75.9 150 40.0
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 1.0e-11 75.5 150 41.3
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.0e-11 75.5 151 39.7
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 1.0e-11 75.5 150 38.0
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.3e-11 75.1 155 41.3
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 1.3e-11 75.1 149 36.2
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.7e-11 74.7 150 38.0
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 2.2e-11 74.3 152 39.5
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 2.2e-11 74.3 150 41.3
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 2.9e-11 73.9 155 36.8
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.9e-11 73.9 150 37.3
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 3.8e-11 73.6 151 39.1
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 3.8e-11 73.6 153 38.6
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 3.8e-11 73.6 144 37.5
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 3.8e-11 73.6 144 41.0
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 5.0e-11 73.2 153 38.6
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 6.5e-11 72.8 153 39.9
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 6.5e-11 72.8 173 38.2
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.4e-10 71.6 150 38.0
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.9e-10 71.2 150 37.3
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.5e-10 70.9 150 37.3
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 2.5e-10 70.9 155 40.0
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 3.2e-10 70.5 150 37.3
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 4.2e-10 70.1 167 37.1
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 4.2e-10 70.1 144 37.5
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 7.2e-10 69.3 150 37.3
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 9.4e-10 68.9 188 35.1
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.2e-09 68.6 145 38.6
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 2.1e-09 67.8 216 29.6
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 4.6e-09 66.6 151 36.4
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.0e-08 65.5 140 38.6
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-08 65.1 138 38.4
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-08 65.1 138 38.4
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-08 65.1 138 38.4
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.8e-08 64.7 140 39.3
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 1.8e-08 64.7 150 36.0
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 2.3e-08 64.3 148 35.8
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 2.3e-08 64.3 150 35.3
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 3.0e-08 63.9 144 38.2
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.1e-08 63.2 153 32.7
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 2.0e-07 61.2 140 36.4
CSS0001594 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.5e-07 60.8 65 49.2
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 4.3e-07 60.1 165 34.5
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 5.7e-07 59.7 152 34.2
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 7.4e-07 59.3 166 31.3
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.2e-06 57.8 157 36.3
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 6.3e-06 56.2 207 27.5


User provided reference genes

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