Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 2.1e-158 562.4 295 100.0
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.0e-153 545.8 295 97.6
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.6e-116 422.5 306 77.5
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.2e-113 413.7 311 76.5
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.7e-104 383.3 300 73.7
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.9e-103 379.8 302 72.8
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.9e-103 379.8 302 72.8
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.3e-103 379.0 300 70.3
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 3.6e-102 375.6 303 72.6
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 5.2e-101 371.7 302 72.2
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 3.4e-100 369.0 292 71.2
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 3.7e-99 365.5 301 69.1
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 4.9e-99 365.2 305 69.5
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 1.1e-98 364.0 303 69.6
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 2.4e-98 362.8 298 71.8
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.9e-95 353.2 303 67.3
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 4.7e-94 348.6 406 56.4
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 6.2e-94 348.2 306 66.0
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 6.2e-94 348.2 298 69.1
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 3.1e-93 345.9 300 68.3
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 6.8e-93 344.7 297 68.7
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.2e-92 344.0 299 69.6
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 3.4e-92 342.4 286 71.0
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 4.4e-92 342.0 296 67.9
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 4.4e-92 342.0 296 67.6
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 7.5e-92 341.3 296 68.6
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 9.9e-92 340.9 297 68.4
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.2e-91 339.7 299 68.9
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 2.9e-91 339.3 277 71.5
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.5e-89 332.4 304 65.8
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.3e-88 330.5 308 67.2
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 6.6e-88 328.2 301 64.1
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 8.6e-88 327.8 297 64.3
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 8.6e-88 327.8 259 72.2
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 4.3e-87 325.5 295 66.8
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 2.1e-86 323.2 301 64.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.8e-86 322.8 302 66.6
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 3.6e-86 322.4 306 63.7
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.8e-85 320.1 292 62.3
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 2.0e-84 316.6 321 60.4
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.4e-84 315.5 305 62.6
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 2.2e-83 313.2 293 62.8
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.9e-83 312.8 308 64.0
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 6.4e-83 311.6 296 62.2
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 3.2e-82 309.3 277 68.2
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.2e-82 308.9 279 64.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 4.2e-82 308.9 300 63.7
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.2e-81 307.4 306 60.5
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 7.8e-81 304.7 301 59.5
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.0e-80 304.3 305 62.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.0e-80 304.3 305 62.3
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.0e-80 302.8 304 59.9
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 3.9e-80 302.4 301 62.5
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 8.7e-80 301.2 306 62.7
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 8.7e-80 301.2 306 62.7
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 8.7e-80 301.2 300 63.0
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 8.7e-80 301.2 272 62.9
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.5e-79 300.4 268 67.2
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.9e-79 300.1 307 60.9
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.9e-79 300.1 305 61.0
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 2.5e-79 299.7 300 59.3
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 2.8e-78 296.2 305 60.7
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 4.7e-78 295.4 303 62.0
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.7e-78 295.4 298 59.1
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.4e-77 293.9 310 61.6
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.8e-77 293.5 266 65.0
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.4e-77 293.1 311 62.4
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 3.1e-77 292.7 301 61.8
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 3.1e-77 292.7 302 63.2
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.5e-76 290.4 274 63.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.6e-76 289.7 300 62.0
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.6e-76 289.7 300 59.3
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.4e-76 289.3 313 56.9
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.4e-76 289.3 290 57.6
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 4.4e-76 288.9 303 60.4
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 4.4e-76 288.9 303 62.7
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.3e-75 287.3 307 60.6
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 2.9e-75 286.2 261 66.3
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 6.4e-75 285.0 303 58.7
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.4e-74 283.9 310 55.5
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 1.9e-74 283.5 290 58.6
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 2.4e-74 283.1 292 62.3
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 9.3e-74 281.2 305 57.0
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.7e-73 279.6 306 60.5
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 6.0e-73 278.5 280 62.1
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.0e-72 277.7 271 61.3
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.9e-71 273.5 311 55.6
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 3.3e-71 272.7 305 57.0
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 4.3e-71 272.3 250 63.2
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 4.3e-71 272.3 301 58.1
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-69 267.7 284 59.9
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 3.1e-69 266.2 302 58.3
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.3e-67 260.8 266 63.5
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 3.8e-67 259.2 287 56.1
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 7.1e-66 255.0 300 56.3
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 9.3e-66 254.6 248 64.1
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 3.5e-65 252.7 268 57.5
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.8e-64 250.4 306 55.6
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 5.6e-63 245.4 275 56.7
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 9.6e-63 244.6 300 55.7
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 9.6e-63 244.6 314 56.4
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 2.0e-60 236.9 298 55.4
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 2.2e-59 233.4 197 71.6
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 8.4e-59 231.5 298 52.0
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.4e-58 230.7 308 53.2
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 5.5e-58 228.8 253 58.1
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 5.5e-58 228.8 287 50.9
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.7e-57 226.5 231 59.7
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 2.3e-56 223.4 260 55.0
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 3.9e-56 222.6 307 52.1
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 6.7e-56 221.9 261 57.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.3e-55 219.5 293 50.2
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 4.8e-54 215.7 255 56.1
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.4e-53 214.2 288 48.3
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 6.9e-53 211.8 308 51.3
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.6e-52 209.9 297 47.1
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 7.1e-50 201.8 298 45.0
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.2e-42 176.4 238 51.7
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.2e-41 174.5 156 68.6
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.6e-41 174.1 185 62.7
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 2.3e-40 170.2 168 62.5
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 6.7e-40 168.7 261 46.7
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.5e-39 166.8 290 41.4
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 9.7e-39 164.9 241 46.9
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 6.3e-38 162.2 255 44.3
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.7e-35 154.1 323 37.5
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 5.0e-35 152.5 227 44.1
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 8.5e-35 151.8 352 35.5
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.1e-33 147.1 275 39.3
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.0e-31 140.6 278 36.0
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 4.1e-29 132.9 282 39.0
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 5.3e-29 132.5 105 69.5
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.6e-28 130.2 224 46.9
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 4.2e-26 122.9 261 39.8
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 3.7e-22 109.8 180 41.1
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.0e-19 101.7 88 56.8
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.4e-15 86.7 71 73.2
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.5e-15 85.5 76 53.9
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 7.0e-13 79.0 76 53.9
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 2.2e-11 73.9 108 47.2
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.5e-10 70.5 57 61.4
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 5.5e-10 69.3 127 45.7
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 1.6e-09 67.8 121 40.5
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.5e-07 61.2 121 33.1
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 7.5e-07 58.9 86 46.5


User provided reference genes

Program Settings