Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 2.0e-86 322.4 163 100.0
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.6e-49 199.1 123 86.2
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 5.7e-49 198.0 123 86.2
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 5.7e-49 198.0 123 86.2
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 5.7e-49 198.0 123 85.4
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 7.4e-49 197.6 123 86.2
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 7.4e-49 197.6 123 86.2
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 7.4e-49 197.6 123 85.4
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 7.4e-49 197.6 123 86.2
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 7.4e-49 197.6 123 86.2
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 1.3e-48 196.8 123 86.2
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.3e-48 196.8 123 84.6
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 2.2e-48 196.1 123 85.4
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 2.2e-48 196.1 123 85.4
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 2.2e-48 196.1 123 83.7
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.2e-48 196.1 123 85.4
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 2.2e-48 196.1 123 85.4
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 2.8e-48 195.7 123 84.6
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 2.8e-48 195.7 124 84.7
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.7e-48 195.3 123 85.4
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.7e-48 195.3 123 85.4
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 3.7e-48 195.3 123 85.4
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 4.8e-48 194.9 123 84.6
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 4.8e-48 194.9 123 84.6
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 6.3e-48 194.5 123 84.6
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 6.3e-48 194.5 123 84.6
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 8.2e-48 194.1 123 83.7
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 1.1e-47 193.7 123 83.7
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 1.1e-47 193.7 123 83.7
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.1e-47 193.7 123 84.6
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.4e-47 193.4 123 82.9
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 1.4e-47 193.4 123 83.7
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 1.4e-47 193.4 123 82.9
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 1.4e-47 193.4 123 82.9
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 1.8e-47 193.0 123 83.7
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.8e-47 193.0 123 83.7
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 2.4e-47 192.6 123 83.7
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 2.4e-47 192.6 123 82.9
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 2.4e-47 192.6 123 84.6
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 3.1e-47 192.2 123 82.9
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 5.3e-47 191.4 125 80.8
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 7.0e-47 191.0 127 81.9
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 9.1e-47 190.7 123 82.9
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 9.1e-47 190.7 123 82.1
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 9.1e-47 190.7 123 83.7
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.2e-46 190.3 123 82.1
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 1.2e-46 190.3 124 82.3
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.2e-46 190.3 123 81.3
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 1.2e-46 190.3 123 82.9
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.2e-46 190.3 123 81.3
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 2.0e-46 189.5 123 82.1
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.0e-46 189.5 123 82.1
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 2.0e-46 189.5 123 82.1
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 2.6e-46 189.1 123 82.1
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 3.5e-46 188.7 123 81.3
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 3.5e-46 188.7 123 81.3
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 4.5e-46 188.3 123 82.1
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 5.9e-46 188.0 123 81.3
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 5.9e-46 188.0 123 81.3
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 7.7e-46 187.6 123 81.3
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.0e-45 187.2 123 80.5
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.0e-45 187.2 123 80.5
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.3e-45 186.8 123 79.7
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.3e-45 186.8 123 79.7
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.3e-45 186.8 123 79.7
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 1.3e-45 186.8 123 80.5
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.3e-45 186.8 123 81.3
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 1.3e-45 186.8 123 81.3
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 2.9e-45 185.7 123 80.5
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 3.8e-45 185.3 123 80.5
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 3.8e-45 185.3 123 79.7
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 5.0e-45 184.9 123 79.7
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 5.0e-45 184.9 123 78.9
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 5.0e-45 184.9 123 80.5
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 1.9e-44 183.0 123 79.7
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 3.2e-44 182.2 123 78.0
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 4.2e-44 181.8 123 78.0
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 4.2e-44 181.8 123 76.4
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 4.2e-44 181.8 123 78.9
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.2e-43 180.3 123 77.2
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 2.1e-43 179.5 123 76.4
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 6.1e-43 177.9 123 76.4
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 6.1e-43 177.9 123 76.4
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 6.1e-43 177.9 123 76.4
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 6.1e-43 177.9 123 76.4
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 6.1e-43 177.9 123 76.4
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 6.1e-43 177.9 123 76.4
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 8.0e-43 177.6 123 76.4
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 3.0e-42 175.6 123 75.6
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 3.0e-42 175.6 123 75.6
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.0e-42 175.6 123 74.8
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 4.0e-42 175.3 123 74.8
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 4.0e-42 175.3 123 74.8
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 4.0e-42 175.3 123 74.8
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 6.8e-42 174.5 123 74.0
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 1.5e-41 173.3 123 73.2
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 2.0e-41 172.9 123 74.0
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 4.4e-41 171.8 128 73.4
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.8e-40 169.1 108 84.3
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 2.8e-40 169.1 92 92.4
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 1.4e-39 166.8 122 71.3
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.2e-38 163.7 123 74.0
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 7.7e-38 161.0 121 70.2
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 1.7e-37 159.8 86 94.2
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 3.8e-37 158.7 122 68.0
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 5.5e-36 154.8 113 73.5
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 2.8e-32 142.5 125 62.4
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 6.3e-32 141.4 123 67.5
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 1.8e-31 139.8 121 60.3
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.6e-30 136.7 123 61.0
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 2.7e-30 136.0 123 66.7
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 1.0e-29 134.0 123 64.2
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 6.6e-29 131.3 132 57.6
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 8.6e-29 131.0 87 77.0
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 1.4e-23 113.6 82 74.4
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 1.0e-21 107.5 81 69.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.4e-18 97.1 143 44.8
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 9.8e-09 64.3 122 40.2
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 9.8e-09 64.3 74 54.1


User provided reference genes

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