Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 7.9e-132 473.8 239 100.0
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.6e-127 458.8 258 91.1
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 3.7e-105 385.2 258 76.7
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 3.7e-97 358.6 258 69.4
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 9.4e-93 344.0 258 69.4
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 4.0e-91 338.6 257 66.9
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 7.5e-90 334.3 230 75.7
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 1.4e-88 330.1 241 68.0
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.4e-88 329.3 257 66.5
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 4.1e-88 328.6 257 68.1
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 7.0e-88 327.8 258 67.8
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 2.3e-86 322.8 257 65.0
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 5.5e-85 318.2 250 66.8
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 7.2e-85 317.8 255 66.3
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 2.1e-84 316.2 259 65.3
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 2.8e-84 315.8 249 65.5
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 3.6e-84 315.5 257 63.4
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 6.1e-84 314.7 251 62.9
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 8.0e-84 314.3 249 65.9
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 8.0e-84 314.3 258 62.8
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 1.4e-83 313.5 251 66.5
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 8.9e-83 310.8 257 62.6
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 1.2e-82 310.5 253 64.8
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 4.4e-82 308.5 248 64.5
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 7.5e-82 307.8 292 56.2
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 1.7e-81 306.6 251 63.7
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 3.7e-81 305.4 253 64.0
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 8.3e-81 304.3 257 60.7
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 1.8e-80 303.1 258 62.0
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 1.2e-79 300.4 250 65.2
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 2.7e-79 299.3 257 60.7
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 5.9e-79 298.1 250 64.8
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 3.8e-78 295.4 251 63.3
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 5.0e-78 295.0 253 62.8
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.1e-77 293.9 251 62.5
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 1.1e-77 293.9 236 64.8
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 3.3e-77 292.4 254 61.4
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 3.3e-77 292.4 253 61.3
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 4.3e-77 292.0 243 62.1
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 5.6e-77 291.6 236 64.4
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 2.1e-76 289.7 251 61.4
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 8.0e-76 287.7 252 59.9
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 8.0e-76 287.7 251 62.2
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 2.3e-75 286.2 257 59.5
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.2e-74 283.9 232 65.1
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.2e-74 283.9 251 59.4
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.3e-73 280.4 257 59.1
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 2.9e-73 279.3 250 61.2
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 8.3e-73 277.7 237 61.2
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 1.6e-71 273.5 239 61.9
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.6e-71 273.5 257 57.2
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 2.0e-71 273.1 252 57.5
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 4.6e-71 271.9 251 57.0
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 7.8e-71 271.2 251 59.4
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 5.0e-70 268.5 257 56.8
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 8.6e-70 267.7 236 60.6
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 8.6e-70 267.7 236 60.6
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.1e-69 267.3 257 56.8
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 1.9e-69 266.5 251 54.6
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 2.5e-69 266.2 248 58.1
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 7.3e-69 264.6 258 55.4
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.1e-68 263.1 210 64.8
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 6.2e-68 261.5 241 57.3
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 1.4e-67 260.4 230 60.4
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 1.8e-67 260.0 236 58.5
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 1.8e-67 260.0 236 58.5
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 8.9e-67 257.7 257 52.5
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.2e-66 257.3 257 51.0
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 2.0e-66 256.5 250 52.4
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 3.4e-66 255.8 247 57.1
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 7.5e-66 254.6 253 54.2
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 7.5e-66 254.6 257 50.6
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 9.8e-66 254.2 257 51.4
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 2.9e-65 252.7 255 51.8
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 3.7e-65 252.3 253 51.4
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 3.7e-65 252.3 253 51.8
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 3.7e-65 252.3 253 51.4
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 3.7e-65 252.3 253 51.4
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 3.7e-65 252.3 253 51.8
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 4.9e-65 251.9 257 51.4
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.1e-64 250.8 257 51.4
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.6e-63 246.9 234 56.0
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 7.8e-63 244.6 249 52.6
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 3.3e-61 239.2 257 49.4
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 3.3e-61 239.2 257 49.4
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 3.6e-60 235.7 282 45.4
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 8.1e-60 234.6 254 49.6
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 4.0e-59 232.3 254 53.9
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 6.8e-59 231.5 238 52.5
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.7e-57 226.9 236 50.0
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 8.3e-57 224.6 250 49.2
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 4.6e-55 218.8 249 51.0
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.6e-55 218.8 254 48.8
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 3.9e-54 215.7 183 59.0
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 2.4e-51 206.5 218 53.2
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.5e-50 203.8 336 42.0
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 2.2e-49 199.9 226 50.9
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 2.9e-49 199.5 224 52.7
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 4.1e-48 195.7 171 60.2
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 6.0e-47 191.8 149 61.7
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.1e-45 187.6 152 61.2
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 2.8e-44 183.0 137 70.1
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 1.6e-36 157.1 110 70.9
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 4.6e-31 139.0 231 40.3
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.8e-25 119.4 123 53.7
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 4.9e-25 119.0 129 54.3
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 4.2e-24 115.9 136 47.8
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.5e-21 106.7 116 50.9
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.5e-21 106.7 116 50.9
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 1.8e-19 100.5 83 68.7
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 1.2e-18 97.8 167 34.7
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 2.7e-15 86.7 206 33.0
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 6.0e-15 85.5 154 37.0
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 6.3e-12 75.5 127 36.2
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.6e-10 70.1 67 56.7
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 5.0e-09 65.9 179 28.5
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 5.5e-08 62.4 104 39.4
arahy.Tifrunner.gnm1.ann1.WH0W9H Arachis hypogaea HOM05D006609 ORTHO05D008551 1.8e-06 57.4 38 68.4


User provided reference genes

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