Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.4e-201 706.1 346 100.0
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.4e-193 679.5 346 96.2
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 4.3e-163 578.2 355 80.6
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 6.4e-159 564.3 355 79.4
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 7.9e-157 557.4 353 76.2
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 3.0e-156 555.4 353 77.3
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 3.7e-154 548.5 353 75.1
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 8.1e-154 547.4 353 75.1
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-153 547.0 352 75.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.1e-153 547.0 352 75.3
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.0e-153 545.0 351 75.8
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 4.0e-153 545.0 357 75.1
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.0e-153 545.0 357 75.1
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 4.0e-153 545.0 354 75.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 9.0e-153 543.9 353 74.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 9.0e-153 543.9 355 76.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.2e-152 543.5 351 75.5
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.6e-152 542.3 353 74.8
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 2.6e-152 542.3 353 76.5
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.4e-152 542.0 352 74.1
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.8e-152 541.2 353 74.2
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 7.6e-152 540.8 355 75.5
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 3.8e-151 538.5 353 73.7
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.9e-151 538.1 355 72.7
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-150 536.6 357 73.9
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.2e-149 533.5 356 72.5
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.2e-149 533.5 356 74.4
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 4.6e-149 531.6 351 74.4
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 7.9e-149 530.8 350 74.0
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 2.3e-148 529.3 358 73.7
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.3e-148 529.3 352 73.6
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 3.0e-148 528.9 361 72.0
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 8.7e-148 527.3 298 86.2
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 3.3e-147 525.4 384 68.8
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.6e-146 523.1 354 70.9
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.8e-146 521.5 352 73.0
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.8e-146 521.5 350 73.1
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 8.2e-146 520.8 349 72.8
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.4e-145 519.2 352 72.4
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 3.1e-145 518.8 351 73.2
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 4.0e-145 518.5 347 72.9
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.0e-145 518.5 349 72.2
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.2e-144 516.9 354 72.0
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 4.5e-144 515.0 349 71.6
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.7e-143 513.1 355 71.5
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.7e-143 513.1 352 72.4
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.2e-143 512.7 349 71.1
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.9e-143 512.3 351 71.2
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 4.9e-143 511.5 358 69.3
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 6.5e-143 511.1 351 71.2
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 8.4e-143 510.8 357 71.1
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.2e-142 508.8 349 70.8
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.1e-141 506.1 349 70.8
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.7e-141 505.8 352 71.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 4.6e-141 505.0 353 69.7
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.6e-141 505.0 353 69.1
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 7.9e-141 504.2 345 71.6
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.0e-140 503.8 353 69.7
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.8e-140 503.1 353 70.0
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.0e-140 502.3 357 68.6
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 3.9e-140 501.9 353 69.1
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.7e-140 500.7 299 78.9
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.5e-139 500.0 350 72.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.5e-139 500.0 280 83.2
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.5e-139 500.0 358 69.0
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 3.3e-139 498.8 349 69.6
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.8e-138 495.7 350 70.9
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.7e-138 495.4 376 66.2
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 3.7e-138 495.4 334 71.9
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.4e-137 493.4 326 73.6
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 5.3e-137 491.5 357 66.9
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 9.0e-137 490.7 346 68.8
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 5.9e-136 488.0 364 67.3
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 7.6e-136 487.6 380 64.2
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.6e-136 487.6 411 61.6
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-135 486.5 349 66.2
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 2.2e-135 486.1 349 65.9
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 8.5e-135 484.2 347 65.7
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 8.5e-135 484.2 356 67.1
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-134 483.8 350 66.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.1e-134 483.8 334 71.3
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.2e-134 481.9 373 64.1
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 5.5e-134 481.5 298 75.5
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 7.2e-134 481.1 355 65.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 7.2e-134 481.1 347 68.9
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 9.3e-134 480.7 349 65.3
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.6e-133 479.9 344 69.8
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 7.9e-133 477.6 349 65.0
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.4e-132 476.9 351 65.5
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.4e-132 476.9 357 66.9
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 3.0e-132 475.7 344 66.6
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.1e-132 474.9 301 74.8
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 8.8e-132 474.2 359 65.7
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.5e-131 472.6 355 67.0
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.5e-131 472.6 348 64.4
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.7e-131 470.7 347 65.1
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.3e-130 470.3 352 63.4
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.7e-130 469.9 351 64.4
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.7e-130 469.9 350 63.4
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 2.4e-129 466.1 345 66.1
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 5.3e-129 464.9 347 64.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.2e-128 463.8 263 82.5
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.0e-127 460.7 300 73.7
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.4e-126 456.8 329 65.7
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.5e-126 456.1 358 65.4
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 7.2e-126 454.5 330 69.7
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.6e-125 452.2 310 70.6
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 6.1e-125 451.4 316 71.8
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 7.4e-123 444.5 320 65.6
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.7e-122 443.4 330 64.2
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.3e-122 441.4 347 66.6
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-119 433.7 347 62.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.5e-115 420.2 318 67.0
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 7.7e-112 407.9 343 58.9
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 5.0e-111 405.2 350 59.7
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 3.2e-110 402.5 246 77.6
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 2.1e-109 399.8 251 72.1
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 3.0e-108 396.0 476 45.4
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.1e-101 373.2 217 81.6
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 2.3e-100 369.8 244 74.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.0e-100 369.4 256 72.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.5e-99 367.1 287 62.7
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.1e-97 360.9 246 73.2
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.9e-95 352.8 381 52.2
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.1e-94 350.9 378 48.4
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.9e-94 350.1 369 51.8
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 4.2e-94 349.0 240 71.2
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 2.1e-93 346.7 383 47.8
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 2.8e-93 346.3 324 57.1
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 4.0e-92 342.4 358 50.8
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 8.9e-92 341.3 347 49.9
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.2e-91 340.9 354 52.0
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.8e-90 336.3 289 56.4
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 4.9e-90 335.5 217 77.9
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-89 334.3 210 73.3
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 7.0e-89 331.6 292 61.3
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-84 317.4 194 79.9
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 2.3e-84 316.6 289 57.1
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 7.5e-83 311.6 265 60.4
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 2.4e-81 306.6 280 52.5
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.7e-80 303.1 287 55.4
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.8e-80 301.6 223 65.9
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 7.3e-78 295.0 192 68.8
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-77 294.3 194 75.3
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.4e-73 280.8 194 73.7
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 5.6e-70 268.9 324 48.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 1.3e-63 247.7 134 86.6
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.5e-62 241.5 192 65.1
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.5e-48 196.4 126 73.0
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 2.5e-46 190.3 170 59.4
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.1e-45 187.2 363 32.0
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 3.6e-45 186.4 314 41.4
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 7.1e-41 172.2 206 47.1
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 6.0e-40 169.1 213 40.4
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.6e-37 161.0 302 30.1
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 6.2e-37 159.1 334 37.1
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.4e-35 153.3 116 70.7
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 4.5e-35 152.9 89 77.5
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 7.6e-35 152.1 157 46.5
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.7e-26 124.4 207 33.3
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 3.3e-14 83.6 49 77.6
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 4.3e-14 83.2 68 55.9
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.7e-13 80.1 67 56.7
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.1e-12 77.0 65 55.4
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 6.9e-12 75.9 65 55.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 6.5e-10 69.3 78 55.1
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.2e-09 66.6 74 51.4
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.5e-09 66.2 40 70.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.9e-08 62.4 55 49.1
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.0e-07 60.5 55 49.1
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 1.1e-06 58.5 49 63.3
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.7e-06 55.5 71 46.5


User provided reference genes

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