Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21847 Corylus avellana HOM05D003631 ORTHO05D004219 1.0e-117 426.8 216 100.0
Cfa013342 Carpinus fangiana HOM05D003631 ORTHO05D004219 8.1e-43 177.9 83 98.8
CiPaw.07G207400 Carya illinoinensis HOM05D003631 ORTHO05D004219 3.4e-41 172.6 83 96.4
QL12p026381 Quercus lobata HOM05D003631 ORTHO05D004219 2.2e-40 169.9 83 91.6
TWI34G0985 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 9.3e-39 164.5 83 86.7
CiPaw.08G023400 Carya illinoinensis HOM05D003631 ORTHO05D004219 1.6e-38 163.7 82 91.5
Thecc.09G039600 Theobroma cacao HOM05D003631 ORTHO05D004219 1.0e-37 161.0 83 84.3
TWI63G0861 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 3.0e-37 159.5 83 83.1
Lj1g0005663 Lotus japonicus HOM05D003631 ORTHO05D004219 3.9e-37 159.1 77 93.5
Psat6g034240 Pisum sativum HOM05D003631 ORTHO05D004219 6.6e-37 158.3 77 90.9
Duzib187G0575 Durio zibethinus HOM05D003631 ORTHO05D004219 8.7e-37 157.9 83 85.5
Medtr1g008350 Medicago truncatula HOM05D003631 ORTHO05D004219 8.7e-37 157.9 77 90.9
PGR044G0672 Punica granatum HOM05D003631 ORTHO05D004219 8.7e-37 157.9 83 84.3
Ca_12813_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 1.1e-36 157.5 77 89.6
Oeu012180.1 Olea europaea HOM05D003631 ORTHO05D004219 1.1e-36 157.5 83 81.9
TAR636G2591 Trochodendron aralioides HOM05D003631 ORTHO05D004219 1.1e-36 157.5 83 86.7
Hund03440 Selenicereus undatus HOM05D003631 ORTHO05D004219 1.5e-36 157.1 83 83.1
VMungo0647G2237 Vigna mungo HOM05D003631 ORTHO05D004219 1.5e-36 157.1 77 90.9
Gohir.A08G250900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.9e-36 156.8 83 84.3
Gohir.D08G272400 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.9e-36 156.8 83 84.3
Gorai.004G290800 Gossypium raimondii HOM05D003631 ORTHO05D004219 1.9e-36 156.8 83 84.3
GSVIVG01035673001 Vitis vinifera HOM05D003631 ORTHO05D004219 1.9e-36 156.8 83 85.5
TPR.G12070 Trifolium pratense HOM05D003631 ORTHO05D004219 2.5e-36 156.4 77 89.6
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 3.3e-36 156.0 83 85.5
Phvul.001G078701 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 3.3e-36 156.0 77 89.6
TAR624G0826 Trochodendron aralioides HOM05D003631 ORTHO05D004219 4.3e-36 155.6 83 84.3
Glyma.14G141500 Glycine max HOM05D003631 ORTHO05D004219 5.6e-36 155.2 77 88.3
Lj7A707G38 Lonicera japonica HOM05D003631 ORTHO05D004219 9.6e-36 154.5 83 85.5
arahy.Tifrunner.gnm1.ann1.T1GT7D Arachis hypogaea HOM05D003631 ORTHO05D004219 1.3e-35 154.1 95 77.9
arahy.Tifrunner.gnm1.ann1.YQ2GF9 Arachis hypogaea HOM05D003631 ORTHO05D004219 1.3e-35 154.1 95 77.9
Manes.03G062700 Manihot esculenta HOM05D003631 ORTHO05D004219 1.3e-35 154.1 83 79.5
RcHm_v2.0_Chr6g0305731 Rosa chinensis HOM05D003631 ORTHO05D004219 2.1e-35 153.3 84 81.0
Sabra18G0037800 Salix brachista HOM05D003631 ORTHO05D000007 3.6e-35 152.5 79 86.1
Eucgr.C02890 Eucalyptus grandis HOM05D003631 ORTHO05D004219 4.8e-35 152.1 80 82.5
Lalb_Chr11g0064321 Lupinus albus HOM05D003631 ORTHO05D004219 4.8e-35 152.1 83 80.7
COL.COLO4_18699 Corchorus olitorius HOM05D003631 ORTHO05D004219 8.1e-35 151.4 84 78.6
FAN15G1152 Fragaria x ananassa HOM05D003631 ORTHO05D004219 8.1e-35 151.4 83 80.7
Lalb_Chr23g0269431 Lupinus albus HOM05D003631 ORTHO05D004219 1.1e-34 151.0 83 79.5
SGA_v2.0_scaffold163G38087 Striga asiatica HOM05D003631 ORTHO05D004219 1.1e-34 151.0 79 83.5
Ciclev10009403m.g Citrus clementina HOM05D003631 ORTHO05D004219 1.4e-34 150.6 81 80.2
Duzib150G0491 Durio zibethinus HOM05D003631 ORTHO05D004219 1.4e-34 150.6 82 79.3
FAN20G1208 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.4e-34 150.6 83 80.7
Manes.16G114800 Manihot esculenta HOM05D003631 ORTHO05D004219 1.4e-34 150.6 80 83.8
Oeu014653.1 Olea europaea HOM05D003631 ORTHO05D004219 1.4e-34 150.6 80 81.2
vmacro05360 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 1.4e-34 150.6 83 77.1
MSTRG.1652 Avicennia marina HOM05D003631 ORTHO05D004219 2.4e-34 149.8 80 82.5
Prupe.1G452800 Prunus persica HOM05D003631 ORTHO05D004219 3.1e-34 149.4 83 79.5
Potri.018G037100 Populus trichocarpa HOM05D003631 ORTHO05D004219 5.3e-34 148.7 83 80.7
Sc09g0009080 Simmondsia chinensis HOM05D003631 ORTHO05D004219 6.9e-34 148.3 83 77.1
Eucgr.C03819 Eucalyptus grandis HOM05D003631 ORTHO05D004219 9.0e-34 147.9 83 78.3
EL10Ac2g04076 Beta vulgaris HOM05D003631 ORTHO05D004219 1.2e-33 147.5 83 81.9
CAN.G309.79 Capsicum annuum HOM05D003631 ORTHO05D004219 2.0e-33 146.7 80 86.2
Nitab4.5_0000664g0300 Nicotiana tabacum HOM05D003631 ORTHO05D004219 2.0e-33 146.7 80 85.0
Gohir.A05G023800 Gossypium hirsutum HOM05D003631 ORTHO05D004219 3.4e-33 146.0 83 77.1
Gohir.D05G025300 Gossypium hirsutum HOM05D003631 ORTHO05D004219 3.4e-33 146.0 83 77.1
Gorai.009G025400 Gossypium raimondii HOM05D003631 ORTHO05D004219 3.4e-33 146.0 83 77.1
Nitab4.5_0001567g0050 Nicotiana tabacum HOM05D003631 ORTHO05D004219 3.4e-33 146.0 80 83.8
Potri.018G081600 Populus trichocarpa HOM05D003631 ORTHO05D004219 3.4e-33 146.0 82 78.0
CSS0042874 Camellia sinensis var. sinensis HOM05D003631 ORTHO05D004219 4.5e-33 145.6 84 78.6
FvH4_2g36140 Fragaria vesca HOM05D003631 ORTHO05D004219 4.5e-33 145.6 83 78.3
MBI04_g29968_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 4.5e-33 145.6 82 76.8
Ah.16g105220 Amaranthus hybridus HOM05D003631 ORTHO05D004219 5.8e-33 145.2 83 77.1
AUR62009332 Chenopodium quinoa HOM05D003631 ORTHO05D004219 5.8e-33 145.2 83 78.3
AUR62023018 Chenopodium quinoa HOM05D003631 ORTHO05D004219 5.8e-33 145.2 83 78.3
DCAR_003006 Daucus carota HOM05D003631 ORTHO05D004219 5.8e-33 145.2 82 81.7
COL.COLO4_34847 Corchorus olitorius HOM05D003631 ORTHO05D004219 7.6e-33 144.8 83 80.7
MD15G1098000 Malus domestica HOM05D003631 ORTHO05D004219 7.6e-33 144.8 81 77.8
Cpa.g.sc23.96 Carica papaya HOM05D003631 ORTHO05D004219 9.9e-33 144.4 83 81.9
Duzib150G1599 Durio zibethinus HOM05D003631 ORTHO05D004219 9.9e-33 144.4 83 79.5
PGSC0003DMG400018567 Solanum tuberosum HOM05D003631 ORTHO05D004219 9.9e-33 144.4 80 83.8
CDE05G3059 Ceratophyllum demersum HOM05D003631 ORTHO05D004219 1.3e-32 144.1 80 78.8
Migut.E01509 Erythranthe guttata HOM05D003631 ORTHO05D004219 1.3e-32 144.1 75 84.0
Gorai.010G072100 Gossypium raimondii HOM05D003631 ORTHO05D004219 1.3e-32 144.1 83 79.5
Sopen11g029010 Solanum pennellii HOM05D003631 ORTHO05D004219 1.3e-32 144.1 80 83.8
MSTRG.14009 Avicennia marina HOM05D003631 ORTHO05D004219 1.7e-32 143.7 80 78.8
Lsat_1_v5_gn_1_49860 Lactuca sativa HOM05D003631 ORTHO05D004219 1.7e-32 143.7 82 80.5
Ciclev10009440m.g Citrus clementina HOM05D003631 ORTHO05D004219 2.2e-32 143.3 83 75.9
Rhsim07G0153300 Rhododendron simsii HOM05D003631 ORTHO05D004219 2.9e-32 142.9 83 72.3
Sabra18G0068700 Salix brachista HOM05D003631 ORTHO05D004219 2.9e-32 142.9 82 76.8
MBI01_g28041_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 6.4e-32 141.7 83 73.5
Nn2g11722 Nelumbo nucifera HOM05D003631 ORTHO05D004219 6.4e-32 141.7 80 76.2
SalBow1G6702 Salvia bowleyana HOM05D003631 ORTHO05D004219 6.4e-32 141.7 81 79.0
MD15G1183700 Malus domestica HOM05D003631 ORTHO05D004219 8.4e-32 141.4 80 76.2
Solyc11g071330.3 Solanum lycopersicum HOM05D003631 ORTHO05D004219 8.4e-32 141.4 77 85.7
MD08G1118700 Malus domestica HOM05D003631 ORTHO05D004219 1.1e-31 141.0 112 58.9
FAN27G1133 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.4e-31 140.6 83 78.3
MD02G1045400 Malus domestica HOM05D003631 ORTHO05D004219 1.4e-31 140.6 80 76.2
Prupe.7G232500 Prunus persica HOM05D003631 ORTHO05D004219 2.4e-31 139.8 80 76.2
unitig_578.g16597 Utricularia gibba HOM05D003631 ORTHO05D004219 3.2e-31 139.4 79 75.9
FAN19G0016 Fragaria x ananassa HOM05D003631 ORTHO05D004219 5.4e-31 138.7 76 78.9
Dinv36643 Davidia involucrata HOM05D003631 ORTHO05D004219 7.1e-31 138.3 83 69.9
HPP92_000527 Vanilla planifolia HOM05D003631 ORTHO05D004219 9.3e-31 137.9 82 74.4
Os01g0228300 Oryza sativa ssp. japonica HOM05D003631 ORTHO05D004219 1.2e-30 137.5 82 73.2
ATR0315G107 Amborella trichopoda HOM05D003631 ORTHO05D004219 1.6e-30 137.1 79 73.4
FvH4_1g04560 Fragaria vesca HOM05D003631 ORTHO05D004219 1.6e-30 137.1 76 77.6
FAN23G2002 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.6e-30 137.1 76 77.6
FAN28G0644 Fragaria x ananassa HOM05D003631 ORTHO05D004219 1.6e-30 137.1 76 77.6
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 1.6e-30 137.1 77 75.3
CANSAT56G0429 Cannabis sativa HOM05D003631 ORTHO05D004219 2.1e-30 136.7 83 77.1
CARHR100800 Cardamine hirsuta HOM05D003631 ORTHO05D004219 2.7e-30 136.3 80 71.2
FAN26G2044 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.5e-30 136.0 76 76.3
Lsat_1_v5_gn_6_11000 Lactuca sativa HOM05D003631 ORTHO05D004219 3.5e-30 136.0 82 75.6
Lj7A652G70 Lonicera japonica HOM05D003631 ORTHO05D004219 3.5e-30 136.0 74 81.1
RcHm_v2.0_Chr2g0090261 Rosa chinensis HOM05D003631 ORTHO05D004219 3.5e-30 136.0 76 76.3
CANSAT56G1660 Cannabis sativa HOM05D003631 ORTHO05D004219 6.0e-30 135.2 83 75.9
Aqoxy7G03847 Aquilegia oxysepala HOM05D003631 ORTHO05D004219 7.9e-30 134.8 78 74.4
Carub.0003s2496 Capsella rubella HOM05D003631 ORTHO05D004219 7.9e-30 134.8 80 70.0
Zm00001eb339190 Zea mays HOM05D003631 ORTHO05D004219 7.9e-30 134.8 80 72.5
Cc06_g09780 Coffea canephora HOM05D003631 ORTHO05D004219 1.0e-29 134.4 83 68.7
PSO210G4261 Papaver somniferum HOM05D003631 ORTHO05D004219 1.0e-29 134.4 82 69.5
PSO210G6180 Papaver somniferum HOM05D003631 ORTHO05D004219 1.0e-29 134.4 82 69.5
Hma1.2p1_1151F.1_g262060 Hydrangea macrophylla HOM05D003631 ORTHO05D004219 1.8e-29 133.7 72 76.4
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 2.3e-29 133.3 69 84.1
HanXRQChr01g0029581 Helianthus annuus HOM05D003631 ORTHO05D004219 3.9e-29 132.5 79 75.9
ClCG11G002440 Citrullus lanatus HOM05D003631 ORTHO05D004219 6.7e-29 131.7 78 73.1
MELO3C004559.2 Cucumis melo HOM05D003631 ORTHO05D004219 6.7e-29 131.7 78 73.1
Psat7g013480 Pisum sativum HOM05D003631 ORTHO05D004219 8.7e-29 131.3 85 64.7
AL3G40110 Arabidopsis lyrata HOM05D003631 ORTHO05D004219 1.1e-28 131.0 81 70.4
AT3G24570 Arabidopsis thaliana HOM05D003631 ORTHO05D004219 1.1e-28 131.0 81 70.4
Lalb_Chr09g0331201 Lupinus albus HOM05D003631 ORTHO05D004219 1.1e-28 131.0 79 68.4
Aa31sc29G40 Aethionema arabicum HOM05D003631 ORTHO05D004219 1.5e-28 130.6 84 67.9
CsaV3_2G002230 Cucumis sativus L. HOM05D003631 ORTHO05D004219 1.5e-28 130.6 78 71.8
Atru.chr7.1365 Acer truncatum HOM05D003631 ORTHO05D004219 1.9e-28 130.2 79 72.2
arahy.Tifrunner.gnm1.ann1.05GVWZ Arachis hypogaea HOM05D003631 ORTHO05D004219 4.3e-28 129.0 82 64.6
arahy.Tifrunner.gnm1.ann1.AAYU95 Arachis hypogaea HOM05D003631 ORTHO05D004219 4.3e-28 129.0 82 64.6
BcaB03g14575 Brassica carinata HOM05D003631 ORTHO05D004219 4.3e-28 129.0 86 66.3
Ca_17334_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 4.3e-28 129.0 71 73.2
HanXRQChr02g0048081 Helianthus annuus HOM05D003631 ORTHO05D004219 4.3e-28 129.0 83 68.7
THA.LOC104804593 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 5.6e-28 128.6 80 70.0
Sp3g22360 Schrenkiella parvula HOM05D003631 ORTHO05D004219 7.4e-28 128.3 81 69.1
Medtr8g103490 Medicago truncatula HOM05D003631 ORTHO05D004219 9.6e-28 127.9 83 65.1
HanXRQChr10g0313001 Helianthus annuus HOM05D003631 ORTHO05D004219 1.3e-27 127.5 69 76.8
SalBow4G1124 Salvia bowleyana HOM05D003631 ORTHO05D004219 1.3e-27 127.5 88 63.6
Sed0024476 Sechium edule HOM05D003631 ORTHO05D004219 1.3e-27 127.5 78 70.5
vmacro06223 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 1.3e-27 127.5 81 71.6
BcaB06g26661 Brassica carinata HOM05D003631 ORTHO05D004219 1.6e-27 127.1 81 67.9
BcaC01g03273 Brassica carinata HOM05D003631 ORTHO05D004219 1.6e-27 127.1 81 67.9
A03p43790 Brassica napus HOM05D003631 ORTHO05D004219 1.6e-27 127.1 81 67.9
C03p54110 Brassica napus HOM05D003631 ORTHO05D004219 1.6e-27 127.1 81 67.9
BraA03t13514Z Brassica rapa HOM05D003631 ORTHO05D004219 1.6e-27 127.1 81 67.9
Thhalv10002655m.g Eutrema salsugineum HOM05D003631 ORTHO05D004219 2.1e-27 126.7 81 67.9
Lj4g0024734 Lotus japonicus HOM05D003631 ORTHO05D004219 2.8e-27 126.3 71 71.8
Glyma.13G074500 Glycine max HOM05D003631 ORTHO05D004219 3.6e-27 125.9 82 64.6
SEGI_07691 Sequoiadendron giganteum HOM05D003631 ORTHO05D004219 3.6e-27 125.9 71 74.6
VMungo0331G0778 Vigna mungo HOM05D003631 ORTHO05D004219 3.6e-27 125.9 68 76.5
GSVIVG01015380001 Vitis vinifera HOM05D003631 ORTHO05D004219 3.6e-27 125.9 76 73.7
Sc08g0007510 Simmondsia chinensis HOM05D003631 ORTHO05D004219 4.8e-27 125.6 78 69.2
THA.LOC104821638 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 4.8e-27 125.6 66 77.3
TPR.G23442 Trifolium pratense HOM05D003631 ORTHO05D004219 4.8e-27 125.6 84 61.9
A07p07710 Brassica napus HOM05D003631 ORTHO05D004219 1.4e-26 124.0 79 67.1
C07p11590 Brassica napus HOM05D003631 ORTHO05D004219 1.4e-26 124.0 79 67.1
BolC7t41632H Brassica oleracea HOM05D003631 ORTHO05D004219 1.4e-26 124.0 79 67.1
BraA07t28564Z Brassica rapa HOM05D003631 ORTHO05D004219 1.4e-26 124.0 79 67.1
DCAR_024691 Daucus carota HOM05D003631 ORTHO05D004219 6.9e-26 121.7 76 69.7
DCAR_031967 Daucus carota HOM05D003631 ORTHO05D004219 6.9e-26 121.7 76 69.7
BcaC06g35727 Brassica carinata HOM05D003631 ORTHO05D004219 9.0e-26 121.3 78 62.8
Lalb_Chr05g0222891 Lupinus albus HOM05D003631 ORTHO05D004219 9.0e-26 121.3 72 68.1
PSO063G0959 Papaver somniferum HOM05D003631 ORTHO05D004219 5.8e-25 118.6 98 58.2
Rhsim03G0240900 Rhododendron simsii HOM05D003631 ORTHO05D004219 1.3e-24 117.5 73 69.9
Peaxi162Scf00231g00034 Petunia axillaris HOM05D003631 ORTHO05D004219 2.2e-24 116.7 105 53.3
Phvul.010G165700 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 2.9e-24 116.3 82 61.0
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 1.4e-23 114.0 97 59.8
Mapoly0013s0132 Marchantia polymorpha HOM05D003631 ORTHO05D004219 1.4e-23 114.0 100 50.0
CBR_g20451 Chara braunii HOM05D003631 ORTHO05D004219 3.2e-23 112.8 90 56.7
Pp3c2_29560 Physcomitrium patens HOM05D003631 ORTHO05D004219 3.2e-23 112.8 100 54.0
PSO782G4304 Papaver somniferum HOM05D003631 ORTHO05D004219 4.2e-23 112.5 98 50.0
PSO832G3257 Papaver somniferum HOM05D003631 ORTHO05D004219 4.2e-23 112.5 98 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3200 Anthoceros agrestis HOM05D003631 ORTHO05D004219 1.2e-22 110.9 92 51.1
SMO301G0049 Selaginella moellendorffii HOM05D003631 ORTHO05D004219 3.5e-22 109.4 92 52.2
Potri.006G242700 Populus trichocarpa HOM05D003631 ORTHO05D004219 7.9e-22 108.2 59 79.7
Ciclev10010528m.g Citrus clementina HOM05D003631 ORTHO05D004219 9.0e-18 94.7 80 55.0
SMO301G0062 Selaginella moellendorffii HOM05D003631 ORTHO05D004219 2.6e-17 93.2 71 53.5
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 6.0e-14 82.0 46 78.3
Glyma.08G038300 Glycine max HOM05D003631 ORTHO05D004219 1.1e-12 77.8 96 45.8
Oeu014652.1 Olea europaea HOM05D003631 ORTHO05D004219 1.3e-11 74.3 51 70.6
ECA248G3192 Erigeron canadensis HOM05D003631 ORTHO05D004219 2.1e-11 73.6 37 89.2
Cre09.g389208 Chlamydomonas reinhardtii HOM05D003631 ORTHO05D004219 1.8e-10 70.5 103 37.9
Gohir.A06G063200 Gossypium hirsutum HOM05D003631 ORTHO05D004219 1.2e-06 57.8 32 78.1
TPR.G21685 Trifolium pratense HOM05D002608 ORTHO05D013420 2.7e-06 56.6 33 66.7
Thecc.09G108900 Theobroma cacao HOM05D003631 ORTHO05D004219 6.1e-06 55.5 28 85.7


User provided reference genes

Program Settings