Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 3.3e-56 221.5 111 100.0
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.2e-29 133.3 84 83.3
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.1e-27 126.7 84 78.6
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 2.0e-21 105.9 84 66.7
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.7e-20 102.8 84 67.9
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.7e-20 102.8 86 62.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.2e-20 102.4 84 63.1
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.2e-20 102.4 84 59.5
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 6.5e-20 100.9 86 60.5
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.4e-19 99.8 86 60.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.4e-19 99.8 92 58.7
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.5e-19 99.0 80 63.8
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 4.2e-19 98.2 86 59.3
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 5.5e-19 97.8 84 61.9
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 7.1e-19 97.4 84 61.9
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 9.3e-19 97.1 84 59.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.2e-18 96.7 86 60.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.6e-18 96.3 84 57.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.7e-18 95.5 84 57.1
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 3.5e-18 95.1 84 61.9
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.6e-18 94.7 84 60.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.6e-18 94.7 86 55.8
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.6e-18 94.7 86 57.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.6e-18 94.7 86 58.1
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.6e-18 94.7 86 58.1
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.0e-18 94.4 84 60.7
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 7.9e-18 94.0 86 55.8
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 7.9e-18 94.0 86 55.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.3e-17 93.2 84 58.3
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.3e-17 93.2 84 58.3
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.3e-17 93.2 84 56.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.8e-17 92.8 84 54.8
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.3e-17 92.4 86 57.0
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 3.0e-17 92.0 86 54.7
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.0e-17 92.0 86 57.0
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.0e-17 92.0 86 53.5
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.0e-17 92.0 86 53.5
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.0e-17 92.0 84 59.5
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.0e-17 92.0 84 60.7
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 3.0e-17 92.0 84 56.0
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 3.0e-17 92.0 84 56.0
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 3.9e-17 91.7 86 57.0
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 6.7e-17 90.9 86 55.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.7e-17 90.9 86 55.8
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 6.7e-17 90.9 84 57.1
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.5e-16 89.7 86 58.1
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.5e-16 89.7 86 53.5
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.5e-16 89.0 84 58.3
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.5e-16 89.0 84 56.0
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.3e-16 88.2 84 57.1
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 5.7e-16 87.8 86 53.5
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 5.7e-16 87.8 86 54.7
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.7e-16 87.8 86 54.7
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 9.7e-16 87.0 81 55.6
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.3e-15 86.7 86 54.7
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.3e-15 86.7 86 53.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.6e-15 86.3 86 52.3
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-15 86.3 86 50.0
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-15 86.3 86 50.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.6e-15 86.3 84 56.0
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.6e-15 86.3 84 51.2
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.2e-15 85.9 84 57.1
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.2e-15 85.9 86 53.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.8e-15 85.5 84 52.4
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.8e-15 85.5 84 51.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.8e-15 85.5 84 53.6
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 3.7e-15 85.1 84 52.4
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 3.7e-15 85.1 84 54.8
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.7e-15 85.1 99 49.5
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.7e-15 85.1 82 58.5
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 4.8e-15 84.7 84 51.2
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 4.8e-15 84.7 85 49.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 6.3e-15 84.3 84 56.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 6.3e-15 84.3 84 53.6
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 8.2e-15 84.0 84 51.2
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.1e-14 83.6 84 51.2
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.1e-14 83.6 86 50.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-14 82.8 84 48.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.4e-14 82.4 84 51.2
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.4e-14 82.4 84 57.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.4e-14 82.4 84 57.1
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 3.1e-14 82.0 84 50.0
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.1e-14 82.0 84 48.8
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.1e-14 81.6 84 50.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 4.1e-14 81.6 84 51.2
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 4.1e-14 81.6 84 51.2
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.1e-14 81.6 86 48.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.1e-14 81.6 92 50.0
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 5.3e-14 81.3 84 51.2
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 5.3e-14 81.3 84 47.6
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 5.3e-14 81.3 86 48.8
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 6.9e-14 80.9 84 51.2
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 6.9e-14 80.9 92 50.0
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 6.9e-14 80.9 81 54.3
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 9.0e-14 80.5 86 47.7
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.2e-13 80.1 86 47.7
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.5e-13 79.7 84 47.6
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.0e-13 79.3 86 48.8
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.6e-13 79.0 84 51.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.4e-13 78.6 84 48.8
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.4e-13 78.6 84 48.8
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.4e-13 78.6 84 48.8
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 4.5e-13 78.2 84 48.8
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 4.5e-13 78.2 84 47.6
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 5.9e-13 77.8 84 46.4
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 7.6e-13 77.4 86 47.7
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.3e-12 76.6 84 50.0
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.3e-12 76.6 84 53.6
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.7e-12 76.3 84 51.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.7e-12 76.3 84 46.4
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.2e-12 75.9 84 48.8
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-12 75.9 79 53.2
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 3.8e-12 75.1 85 49.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 5.0e-12 74.7 84 47.6
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 6.5e-12 74.3 78 46.2
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 6.5e-12 74.3 57 57.9
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 8.5e-12 73.9 86 46.5
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 8.5e-12 73.9 86 43.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 8.5e-12 73.9 86 45.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 8.5e-12 73.9 86 51.2
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 8.5e-12 73.9 84 45.2
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 8.5e-12 73.9 84 51.2
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.1e-11 73.6 85 44.7
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.1e-11 73.6 92 43.5
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.1e-11 73.6 84 52.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.4e-11 73.2 84 46.4
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.9e-11 72.8 86 48.8
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.2e-11 72.0 85 43.5
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 3.2e-11 72.0 84 45.2
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 4.2e-11 71.6 84 48.8
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 5.5e-11 71.2 84 44.0
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.2e-10 70.1 84 47.6
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.8e-09 66.2 85 42.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.3e-09 65.9 79 45.6
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.3e-09 65.9 79 45.6
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 3.0e-09 65.5 86 43.0
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.0e-09 65.5 86 41.9
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.7e-09 64.3 71 47.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.7e-09 64.3 88 42.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 4.3e-08 61.6 57 50.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.4e-06 56.6 81 39.5
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.8e-06 56.2 89 38.2
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 4.1e-06 55.1 41 61.0


User provided reference genes

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